Cryptococcus deneoformans JEC21: CNH01090
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Entry
CNH01090 CDS
T00243
Name
(RefSeq) general RNA polymerase II transcription factor, putative
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CNH01090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cne03000
]
CNH01090
03021 Transcription machinery [BR:
cne03021
]
CNH01090
Transcription factors [BR:
cne03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
CNH01090
Transcription machinery [BR:
cne03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
CNH01090
RNA polymerase III system
TFIIIB
CNH01090
RNA polymerase I system
SL1/TIF-1B
CNH01090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TBP
DUF3378
Motif
Other DBs
NCBI-GeneID:
3259098
NCBI-ProteinID:
XP_572300
UniProt:
Q5KCI0
LinkDB
All DBs
Position
8:join(877403..877578,877853..877940,877991..878263,878312..878453,878509..878528)
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AA seq
232 aa
AA seq
DB search
MSGLALPKASNAGPSSSSSKPEGIQTLDGEGSLATRPPQKAIASVPEITAVDGLVPTLQN
IVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTTALIFASGKMVVTGAKSE
DDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRLEGLAFSHGAFSSYEPEL
FPGLIYRMLKPKVVILIFVSGKIVLTGAKVREEIYMAFNQIYSVLLEFRKTT
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atgtccggtctcgcccttcccaaagcgtccaatgcgggcccgtccagctcaagtagcaag
ccagaaggaattcaaacacttgatggagaaggatctctcgccacaagaccaccgcaaaag
gctattgctagtgttccggagattacagcggtggatggtctagtgccaaccttacaaaac
attgtcgccaccgtcaacctcgactgtcgtttagacttgaagactattgccctccacgct
cgaaatgcggaatacaacccaagacgtttcgctgccgttgtcatgcgtattcgtgaccca
agaacaacggccttgattttcgcttctggaaagatggtcgtcactggtgccaagtctgaa
gacgactctcggttagcatctcgtaaatacgcccgaataatccaaaagcttggttttgag
gccaagttcgccgagttcaagattcagaacatggtcggcagttgcgatgtcaagttccct
atcagattagaaggtctggcattcagccacggtgcattcagcagttacgaaccggagctg
ttccctggtttgatttatcgtatgctcaaacccaaagtcgtcatcctcatcttcgtgtcc
ggcaaaattgtcctcaccggtgcaaaagtcagagaagaaatttacatggcgttcaaccag
atctactctgtgttgctcgaattccgaaagacgacataa
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