Cryptococcus deneoformans JEC21: CNH02710
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Entry
CNH02710 CDS
T00243
Name
(RefSeq) hypothetical protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CNH02710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cne03021
]
CNH02710
03019 Messenger RNA biogenesis [BR:
cne03019
]
CNH02710
Transcription machinery [BR:
cne03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CNH02710
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CNH02710
U7-dependent histone pre-mRNA processing factors
CNH02710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
3259267
NCBI-ProteinID:
XP_572444
UniProt:
P0CM88
LinkDB
All DBs
Position
8:complement(join(359129..359281,359367..359671,359761..359902,360041..360295,360377..360673,360747..361177,361243..361580,361640..361731,361786..361831,361892..362154))
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AA seq
773 aa
AA seq
DB search
MIPRRHHFKPAPQPTVQVLQPPDEDAPSLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGL
HPAQPGIGALPFIDELDWSTVDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATK
AIYGLTMMDTVRLNDQNPDTSGRLYDEADVQSSWQSTIAVDYHQDIVIAGGLRFTPYHAG
HVLGASMFLIEIAGLKILYTGDYSREEDRHLVMAEIPPVKPDVMICESTFGVHTLPDRKE
KEEQFTTLVANIVRRGGRCLMPIPSFGNGQELALLLDEYWNDHPELQNIPVYFASSLFQR
GMRVYKTYVHTMNANIRSRFARRDNPFDFRFVKWLKDPQKLRENKGPCVIMSSPQFMSFG
LSRDLLEEWAPDSKNGVIVTGYSIEGTMARTLLSEPDHIESLKGGNVPRRLTVKEISFGA
HVDYAQNSKFIQEIGAQHVVLVHGEASQMGRLRAALRDTYAAKGQEINIHTPKNCEPLTL
TFRQERMVKAIGSLAATRPEHGTSVKGLLVSKDFSYTLLSPADLHDFTGLSTSTIIQKQG
VAISVDWAVVRWYLEGMYGEVEEGVEEEGKAAFIIMNGVQVVQISPTAVELRWKSSSSND
MIADSALALLLGIDGSPATAKLTASPNKHACNHSNSHSHTDLYPHTYPGDKSAKDVASNP
EFERLRMFLEAHFGHVEGPNLRPPLPPGADGDGNDDKDKDGDDWLTMDVKLDNQTARIDL
ISMRVESESAELQKRVETVLEMALTTVKSLSQTFLGGGLDVDMVKVEPNESDS
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgattccaagacgacaccacttcaagccggctccccaaccaacagtacaagttctccaa
cctccggacgaagatgccccctcgctcacaatcactatgctcggcgcaggccaggaagtg
ggcaggtcctgttgtgtcatagagcacagaggaaagaagattgtatgcgatgccggcctg
catccagcacagcctggtataggagctctaccattcatcgatgaacttgattggtcgact
gtggatgcgatgttgatcactcattttcatgtcgatcatgcagccgctttgccgtatatc
atggagaagaccaatttcaaagacggtaacggcaaagtgtacatgacgcacgctacaaaa
gctatctatggattgaccatgatggacactgtgcgattgaacgatcaaaatccagacact
tccggtcgcctatacgacgaagccgacgtccaatcatcctggcaatccaccatagcagtc
gactatcatcaagatattgttatcgctggtggtctacgtttcaccccctaccatgccggc
catgtccttggagcgtccatgttcctcatcgagattgctgggttgaagatcctgtataca
ggagactattcaagggaggaggaccgacatctggtgatggcggagattccacccgtgaaa
cctgatgtgatgatttgcgagagcacgtttggcgtgcatacattaccagacaggaaggag
aaggaggaacaattcacaacgttggtcgccaacattgtccgaagaggtggccgatgcctc
atgcccatcccctccttcggaaacggccaagaactcgcccttctcctcgacgaatactgg
aacgaccaccccgaacttcaaaacatccctgtctactttgcatcctctcttttccaacgc
ggcatgcgtgtctacaaaacctacgtccacactatgaatgccaatatccgatcacggttc
gccaggagagataacccctttgactttaggtttgtcaagtggttgaaagatccgcagaag
cttagagagaataagggtccttgtgtgatcatgtcttcacctcagtttatgagttttgga
ctcagtcgtgatctgttggaagagtgggcgccggattctaagaacggggtgattgtcact
gggtactccatcgaaggtactatggccaggactctcttgagcgaaccggaccacatcgaa
tccctcaaaggaggcaacgtcccccgccgcttaacagttaaagaaatctctttcggcgct
cacgtcgattatgctcaaaattcaaaattcatccaagaaatcggtgctcagcacgttgtc
ctcgtgcatggagaggcttcgcagatgggaagattgagagcggcgttgagagatacatat
gcggccaaggggcaggagattaatatccatacgccaaaaaattgtgaacctctgactctt
acttttagacaagagcggatggtcaaagctattggctccttagcagctactcgccctgaa
cacggtacctccgtcaaaggtcttctcgtttccaaagatttctcttacactctcctttcc
ccggccgatttacatgatttcactggcctctcaacgagcacgatcatccaaaaacaggga
gtggcgataagtgtagattgggcggtggtgaggtggtatctggaggggatgtatggggaa
gtggaggaaggtgttgaggaagaggggaaagctgcttttattataatgaacggagttcaa
gtggtgcagatatctccaaccgccgtagaactacgatggaagtcaagttcaagtaacgat
atgattgccgattcggctttggctttgttgttgggtatagatgggagccctgctacagct
aagctcaccgcatcaccaaacaaacacgcttgcaaccattccaattcccattcccatacc
gacctgtatccccacacctacccgggcgacaagtccgctaaagacgtagcttccaacccc
gaatttgagagattacgcatgttcctcgaagcgcatttcgggcatgtagagggaccgaat
ttgagaccacctcttcctccgggagcggatggggatggaaatgatgataaggacaaagat
ggggacgattggttgactatggatgtgaagcttgacaatcagacagcgcggatagatcta
atttccatgcgtgtggagtctgaatcagctgagcttcagaaacgggtggaaacagtgttg
gagatggcgttgacgactgtcaagtctctgtcacaaacgtttttgggaggggggctggac
gttgatatggtgaaagtagagcctaacgagagcgatagttga
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