Cryptococcus neoformans var. neoformans JEC21: CNI01880
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Entry
CNI01880 CDS
T00243
Name
(RefSeq) ATP-dependent RNA helicase, putative
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
cne
Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03013
Nucleocytoplasmic transport
cne03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CNI01880
03015 mRNA surveillance pathway
CNI01880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cne03019
]
CNI01880
Enzymes [BR:
cne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CNI01880
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
CNI01880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
3259615
NCBI-ProteinID:
XP_572662
UniProt:
P0CQ86
LinkDB
All DBs
Position
9:complement(join(519542..519729,519784..520048,520096..520333,520385..520674,520733..520835,520885..520977,521032..521105,521156..521442,521494..521689))
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AA seq
577 aa
AA seq
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MKNKNVRIPNLLDLVKICSFLTDISFIGCPVVALPPILPLHPTPVIFIYNLRTKTEEQNM
SNQNDGWGETATETSAPAPPPASAPVSSSNNDGWGEPAPSAPADNGWADAGASNGGSGAN
NNDGWFDAPVPPSSQPPKKEASDIQLQDDTEGLITNTFQVEVKLADLQGDPNSPLYSVQS
FKELNLHEDLMKGIIAAGFQKPSKIQEKALPLLLSNPPRNLIGQSQSGTGKTAAFTLNML
SRVDPTIPTPQAICIAPSRELARQIQEVIDQIGQFTQVGTFLAIPGSWSRNSRIDKQILI
GTPGTLVDMLMRGSRILDPRMIRVLVLDEADELIAQQGLGEQTFRIKQLLPPNVQNVLFS
ATFNDDVQEFADRFAPEANKIFLRKEDITVDAIRQLYLECDSEDQKYEALSALYDCLVIG
QSIVFCKRKVTADHIAERLISEGHAVASLHGDKLSQERDAILDGFRNGETKVLITTNVIA
RGIDIPAVNMVVNYDVPDLGPGGNGPDIETYIHRIGRTGRFGRKGCSVIFTHDYRSKSDV
ERIMNTLGKPMKKIDARSTTDIEQLEKALKLAMKGPA
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacaaaaacgtccgtatcccaaacctattagatcttgtcaaaatttgttccttt
ttaactgacatttcattcattggttgccctgtggtcgctcttcctccgatcttgcctctt
caccctacccctgtcatctttatttacaatctccgtacaaaaacagaggaacaaaacatg
agcaaccagaacgacggatggggagagactgcgacagagaccagtgcccctgctcctcct
cctgcttccgcacccgtcagcagcagtaacaacgacggctggggtgaaccggcgcctagt
gctcccgcagacaacgggtgggccgacgctggagcttccaacggcggtagcggtgcgaac
aacaacgacggatggttcgatgctcctgtacctccgtcttctcaacctccaaagaaggag
gcttccgacatccaactgcaagacgacactgaaggtttgattactaacaccttccaggtc
gaggtcaaacttgccgatctccaaggcgaccccaactctcctctttactctgtccagtct
ttcaaggagcttaatcttcacgaagatctcatgaagggtatcattgccgctggtttccaa
aaaccttccaagattcaagagaaggctcttcctttgctcctctccaatccccctcgaaac
ctcatcgggcaaagtcagtctggtactggtaagactgctgccttcaccctcaacatgttg
agccgagtcgatcctaccatccccacccctcaagccatctgtatcgctccttcccgagaa
cttgcccgtcagattcaagaagttatcgaccaaatcggtcaattcactcaagtcggcact
ttccttgccatccctggctcttggtctcgtaattcccgaatcgacaagcagatcctcatc
ggtacccctggtacccttgtggatatgttgatgaggggctcaagaattttggatcctagg
atgattagggtgttggttcttgacgaggctgacgagttgatcgcccagcaaggtttgggt
gaacagactttcaggatcaagcaactccttcctcccaacgtccaaaatgtccttttctct
gctactttcaacgatgacgttcaagagttcgccgaccgattcgctcccgaagccaacaag
attttcttgaggaaggaagatattactgttgatgcgatcaggcagctttaccttgaatgt
gacagcgaggatcagaagtatgaagccttgtctgccctatacgactgcttggtcatcgga
caaagtatcgtcttctgcaagcgaaaagtcaccgccgaccacattgctgaacgtcttatt
tccgaaggtcatgccgttgcctctctccacggtgacaagctctcccaagaacgtgatgct
atcctcgacggcttcaggaatggtgagaccaaggttctcatcactaccaacgttattgct
cgaggtatcgatatccctgctgtgaacatggtcgttaactatgacgtgcccgacctggga
cctggcggtaatggtccggacatcgagacctacatccaccgtatcggtcgaactggtcga
ttcggccgaaagggttgttctgtcatcttcacccacgactaccgatccaagtccgacgtt
gagcggatcatgaacactctcggaaagcctatgaagaagattgatgccaggagtacgaca
gatatcgagcagttggagaaggctttgaagttggctatgaagggaccggcgtaa
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