KEGG   Cryptococcus deneoformans JEC21: CNJ00400
Entry
CNJ00400          CDS       T00243                                 
Name
(RefSeq) DNA topoisomerase type I, putative
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
cne  Cryptococcus deneoformans JEC21
Pathway
cne03440  Homologous recombination
cne03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    CNJ00400
   03460 Fanconi anemia pathway
    CNJ00400
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cne03032]
    CNJ00400
   03400 DNA repair and recombination proteins [BR:cne03400]
    CNJ00400
Enzymes [BR:cne01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     CNJ00400
DNA replication proteins [BR:cne03032]
 Eukaryotic type
  DNA Topoisomerases
   CNJ00400
DNA repair and recombination proteins [BR:cne03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     CNJ00400
   FA (Fanconi anemia) pathway
     CNJ00400
SSDB
Motif
Pfam: Topoisom_bac Zn_ribbon_GRF Toprim zf-CCHC zf-CCHC_3 zf-CCHC_5
Other DBs
NCBI-GeneID: 3254253
NCBI-ProteinID: XP_024513597
UniProt: Q5KAU9
LinkDB
Position
10:complement(join(103892..104065,104121..104226,104285..104441,104504..104634,104706..104818,104879..104977,105034..105179,105247..105604,105669..105794,105856..106034,106105..106517,106583..106719,106771..106852,106907..107162,107256..107425,107494..107672,107735..107818,107930..108052,108138..108218))
AA seq 1037 aa
MRVLCVAEKPSIAKSITEILSGGRWDTRNGRHQYIRNYDFLYNLAPPLGNGRGANFTVTA
VLGHLTSSDFDDDHRKWGSCDPFALFDAPVITFVDQKLKTVESNLQIEARNADILMIWTD
CDREGEHIGSEVVAACKKVNRNILVKRARFSAIIPAQIHQACRQANDLDMRQADAVATRI
SLDLKVGSAFTRLTTMTLQVRVPDLAEQLISYGPCQFPTLGFVVEQYTRVQAFVPETFWY
IFVALEREHEDGEPSTVEFRWKRNHLFDLDLAAVLYEQCTVNPQTRVLKVESKPATKWKP
LPLTTVELQQSGSRLLHMTPKRILDLAEKLYQKGIVSYPRTETDQYDPKFDFNSLIQKQT
LDNQWGAYAQKLLDGAFQKPRNGRKNDKAHPPIHPTAHAGNLEGDERRVFELITRRFLAS
CSTNAEGQNTTVEISIADEIFSTTGLVVLRRNYLEVYPYDKWATHALPNFEEGEVFIPDV
IDLKEGTTSRPSLLTEADLVGLMDKNGIGTDATIAEHIAKIIERGYVTEKQEARIKYLVP
STLGIGLVEGFNAIGFDRSLSKPHLRRETEHRMQLICDGVRGKREILQTTIEEYKEVFVK
ARREFQTVIDCVENYLHGAGEAQEALRAAARGGRGGRGTRGARGARGGRGTGGRGRGGGG
VVAPRGGRDDDNDDDDDDDDDQGPPRGGVRERARGAATTRGRGTSTARGRAGAAGAGTAA
GRRAGSPTFGADDGGGDTKMCNCGREAVSRVVAKADSAHKGRSFWTCPQPQGEQCGFFEW
GTDGDMARSAGPSKSRTASAQPPPSKRQKTTNRNDPPPSKDGVPSCKCGLDAAFATVIKE
GPNKGRQFWACPNNPKARCGFFQWEDDPNLGSGGSNGGDTYNGGGGRSGTSGECYKCGEA
GHWANACPNDGDGKGGGSSSSRAKSNSKALSKGKSGDSGSDVFGGINVVNKAIGPLIVPI
IQAEGEVALVLGPPVMGLVDIVSNATNQAIGPATVRMMKVEDRHIGVRVAVEVGGEGEEE
EEVNDSTTLMTVVQHHP
NT seq 3114 nt   +upstreamnt  +downstreamnt
atgcgtgtcctgtgcgtcgctgagaagccaagtatagcgaagagtatcaccgagatactc
tccggaggacggtgggatactaggaacggaagacaccaatatatacgcaattacgatttc
ttatacaaccttgctccgccgcttgggaatggaagaggtgccaattttaccgtcacagca
gtcttgggacatttgacttcaagtgattttgatgatgatcatcggaaatgggggtcttgt
gatccgtttgcgctgttcgatgcaccagtcatcactttcgtcgaccaaaaattgaaaaca
gtagaatcaaacctccaaattgaagcccgtaacgccgacatactcatgatttggactgat
tgtgatagagagggagaacatatcggatctgaagtcgtagcggcgtgtaagaaagtaaat
aggaatatccttgtcaaaagagcgaggtttagtgccattatccctgcgcagatccaccaa
gcatgtagacaggcgaacgacttggatatgaggcaggcagatgcggtggccacgaggata
agcttggatctcaaggttggatcggcgttcacaaggcttacaacgatgactttgcaagta
cgagtgcccgatctagcagagcaactcatcagttacggtccatgccaattcccaactctc
ggctttgtcgtcgaacaatacacccgcgtccaagcctttgttcctgaaacgttctggtac
atcttcgtcgccctcgagcgagagcatgaagatggtgaacccagcactgtcgagtttagg
tggaagaggaaccatctgttcgatttagatctggcggcggtgttgtacgaacagtgtaca
gtcaatccgcagacgagggttttgaaggtcgaatcaaagcccgcgaccaagtggaagcca
ttaccgttgacgacagttgagcttcaacaatctggttcgaggttacttcatatgactcct
aaacgaattctcgatcttgccgaaaaactctatcaaaaaggtattgttagttatcctcgt
accgaaaccgatcagtacgatcccaaatttgacttcaactctctcatccaaaagcaaacg
cttgataaccaatggggagcttacgctcaaaagctactagacggtgcctttcagaaaccc
cgaaatggccgtaaaaacgataaagcccatccccctatccaccctaccgcacacgcgggc
aaccttgaaggcgacgaacgccgcgtattcgaactcatcacccgtcgttttctcgcttct
tgctcgaccaacgccgaaggccaaaataccactgtcgaaatctccatcgccgatgagatc
ttctccactacagggcttgtcgtcctgaggaggaattatttggaggtgtacccgtatgac
aagtgggcgacgcatgcgttaccgaattttgaggaaggggaggtttttataccggatgta
attgatttgaaggagggaacgacgagtcgaccaagtttgttgactgaggctgatctggtt
gggttgatggataagaatggcatcggtaccgatgcaaccatcgctgagcatattgccaaa
atcattgaacgcgggtatgttacagaaaaacaagaagctcgaataaaatacctcgtgcca
tctactctgggtatcggtctggtcgaagggttcaatgctatcggttttgaccgttctttg
agcaaaccacatttacgacgagagactgagcatcgaatgcaattgatatgtgatggtgta
cgagggaaaagagagattctccagactacgattgaagaatacaaggaagttttcgtcaag
gcccgtcgagagttccagaccgttatcgattgcgtggaaaactaccttcacggagctggc
gaagcccaagaagctcttcgagcagcagcacggggtggtcgaggcggacgaggaactaga
ggagcgagaggtgcaagaggggggagaggaactggaggaagaggcagaggtggtggagga
gttgtcgctcccagaggcggtcgagatgatgacaatgacgacgacgacgatgatgatgat
gaccaaggtccgccgagaggtggtgtaagagagagagcgagaggtgcggcgacgacgaga
gggaggggaacaagtactgccagaggacgagcgggagctgctggagctgggacggctgct
ggtagaagggcaggatcgcctacttttggcgcggatgatggcggtggcgatacgaaaatg
tgcaactgcggtagagaagctgtctctcgcgttgttgccaaggcggattcggcgcataag
ggaagatcgttttggacatgtcctcagcctcaaggagaacaatgcggcttcttcgaatgg
gggacggatggagatatggcacgctcggctggccctagtaaatcacgaacagccagtgct
caaccgccgccatccaaaagacaaaaaaccacgaatcggaacgatccccctccttcgaaa
gatggcgtaccttcgtgtaaatgtggccttgatgcggctttcgccacagtaatcaaagaa
ggtccaaacaaaggtcgacagttctgggcttgtccgaacaacccgaaagcccgttgtggg
ttcttccaatgggaagatgatcctaatctcggcagtggtggttctaatggaggtgatact
tacaacggaggaggaggaaggagtggaacctcaggagagtgctacaaatgcggagaagcg
ggtcattgggcaaatgcatgtccgaacgacggcgatggcaaaggtggcggctcatcttca
agcagggcaaagtcaaattcaaaggcgctttctaaaggaaaaagcggtgacagtggaagt
gatgtttttggcggtataaatgtggtgaacaaggccattgggccactaattgtcccaata
atacaagcggagggggaggtggctttggtgttggggccaccggtgatgggattagtggac
attgtttcaaatgcaaccaaccaggccattgggccagcaactgtccgaatgatgaaagtg
gaggatcgtcatatcggggttcgagtagcagtagaggtcgggggcgagggagaggaagag
gaagaggtaaacgatagcacgactcttatgactgttgtacaacaccatccataa

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