Cryptococcus deneoformans JEC21: CNJ01040
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Entry
CNJ01040 CDS
T00243
Name
(RefSeq) hypothetical protein
KO
K14308
nuclear pore complex protein Nup54
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CNJ01040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cne03019
]
CNJ01040
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
CNJ01040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nucleoporin_FG
Vps52_CC
Motif
Other DBs
NCBI-GeneID:
3254116
NCBI-ProteinID:
XP_567483
UniProt:
Q5KAN8
LinkDB
All DBs
Position
10:join(296869..296887,296950..297962,298021..298136,298208..298703,298757..298858)
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AA seq
581 aa
AA seq
DB search
MSFGGFGQAAGGAKPLFGGFGQQPTTSAQPATTGGGLFGSQSQPQQQPQQQQQSTGGLFG
SQPKPAGTGMFGSTSQPQQGQQGGGLFGSTTGAGTTGTEGGFFGSTTQQQQQQQQQQPSG
GLFGSTASAPAQGGGGLFGQTQQPQQQPQTGGGLFGSTAGTAGTSTGGLFGQQNQNQQKP
AGGLFGSTAAPATGAGLFGSTQQQPQQQQGGGFFGSTTQQPSQTGGLFGSAAQPQQQQGQ
QQGGGLFGNLGQSQAKPTGGLFGGSAFGAQPQQQQQQPQQQQGGLFGSTFGQSTNQVNQL
QQSQAPHQSMQQSVFGVKKEMDIESRIKAVQNAWDTSSPDCRFKYFFYNVVEEGTANRYG
RPAGANDDAKWAKALRDNPDPNSMVPVLAVGWADVKKRQQLQENLASVHQERIKEITAAL
AHTRQTSLSSSIRLANLQARQSQLVHRLIHLAAQTPQHVPIIQSTVFKQEEADMAKQLEG
VKAELEGHGRNSVKRVEARGEVSRGRLLGQVNELWGQLEEIRRKRKVRGPDGREQWVGDE
KMLSEIAEVLATQQTALQKLSDLAQDANLDADVMLSHGGDR
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttggcggctttggacaagctgcagggggtgctaaacctctttttggaggattc
ggccaacaacccactacctcggctcagccagctacgaccggtggtggactctttggctcc
cagtcccaaccacagcaacaaccccaacaacaacaacaatcaacaggcggtttattcgga
tctcagccaaaacctgcagggacgggaatgtttgggtcaactagccagcctcaacagggg
cagcaaggaggtggattgtttgggtcaacgacaggggcaggcacaacgggaactgaagga
gggttctttgggtcaacgacgcagcaacagcagcagcagcagcagcagcaaccgtctggt
ggattgtttggctctacagccagcgcacctgctcaaggaggtggtgggctctttggtcag
actcaacagcctcagcaacagcctcaaacgggtggtggattgtttggaagtacggcgggt
acagcgggtacgagtacgggaggattgtttggacagcagaaccaaaaccagcaaaagcct
gcgggagggctgtttggaagtaccgctgcacctgcgactggcgctggactgtttgggtcg
acccagcagcagccacaacagcagcaaggaggtggtttctttgggtctactacccagcag
ccttctcagactggtgggctgtttggatcagcagctcaacctcagcaacaacaggggcaa
cagcaaggtggagggttgtttggaaaccttggacagtcacaagccaaacctacaggtggt
ttgttcggcggtagcgcatttggtgctcagcctcaacaacagcaacaacaaccgcagcaa
cagcaaggtggtttgttcggatccacttttggccagtctaccaatcaagtcaaccagctt
caacaatcccaggctcctcatcagagcatgcagcagagcgtgtttggtgtgaagaaggag
atggatatcgagtcgaggatcaaggcggtccagaatgcttgggatactagtagccccgat
tgtcgtttcaaatactttttctataatgttgtggaggaagggacagcaaacagatatgga
aggccggcgggtgcgaacgatgatgccaagtgggcaaaggctttgcgggataaccccgat
cccaactcgatggtccccgtgctggcagtcggctgggccgacgtgaaaaaacgccaacag
ctccaagaaaaccttgcaagcgttcaccaagaacgtatcaaggaaatcaccgccgctctc
gcacacactcgacaaacgtccctctcatcctctatccgtctggccaaccttcaagcaaga
caatctcaacttgtgcatcggttaattcacctcgcagctcaaactccgcaacatgtaccc
atcattcaatcgacagtgtttaagcaggaagaagcagatatggccaagcagcttgaaggg
gtcaaggcggagcttgaaggacatggtagaaatagtgtaaagagggtggaggctagagga
gaagtgtctagagggagactgctgggtcaggtgaatgagctttggggccagttggaggag
attcggaggaaaagaaaggtccgaggtcctgatggacgagaacagtgggtgggagatgag
aagatgctgtctgagattgcagaggttctggcgacgcagcagacggcgttacaaaagctg
tcagatcttgcgcaagacgcgaacctcgatgcggacgtgatgctgagccatggcggcgac
cgatga
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