Cryptococcus deneoformans JEC21: CNL03890
Help
Entry
CNL03890 CDS
T00243
Name
(RefSeq) U6 snRNA binding protein, putative
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03018
RNA degradation
cne03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNL03890
09123 Folding, sorting and degradation
03018 RNA degradation
CNL03890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cne03019
]
CNL03890
03041 Spliceosome [BR:
cne03041
]
CNL03890
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CNL03890
mRNA degradation factors
5'-3' decay
Lsm complex
CNL03890
Spliceosome [BR:
cne03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CNL03890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
3254791
NCBI-ProteinID:
XP_024513902
UniProt:
Q5K900
LinkDB
All DBs
Position
12:complement(join(65011..65036,65104..65187,65243..65314,65431..65557,65662..65673))
Genome browser
AA seq
106 aa
AA seq
DB search
MSSRGGRGGARGGGNQGGERKKRESILNLAQFVDKSIRVKFMGGREATGILKGYDQLMNL
VMDDVVEEYEDGRPTRSLGLVVLRGPNIVLVSPTDGSSEIENPFQQ
NT seq
321 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaagaggtggccgaggcggagctcgtggtggtggtaaccaaggaggtgaacgc
aagaagcgagaatcaattctcaacttggctcagtttgtcgacaagagtatcagagttaaa
tttatgggtggacgagaagctactggtatcttgaaaggctatgaccaacttatgaacttg
gtcatggatgatgtagttgaggagtatgaggatggccgacctacacgaagtcttggatta
gtcgttctccgtggccccaatattgtccttgttagcccaacggacggatcatcagaaatc
gaaaaccctttccaacagtaa
DBGET
integrated database retrieval system
