KEGG   Cryptococcus neoformans var. neoformans JEC21: CNL04765
Entry
CNL04765          CDS       T00243                                 
Name
(RefSeq) hypothetical protein
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03020  RNA polymerase
cne03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CNL04765
  09124 Replication and repair
   03420 Nucleotide excision repair
    CNL04765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cne03021]
    CNL04765
   03400 DNA repair and recombination proteins [BR:cne03400]
    CNL04765
Transcription machinery [BR:cne03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     CNL04765
DNA repair and recombination proteins [BR:cne03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CNL04765
SSDB
Motif
Pfam: Zn_ribbon_TFIIS Zn_ribbon_RPB9 Cas12f1-like_TNB Anti-TRAP DUF7459 Ogr_Delta DUF1062 Zn_ribbon_recom C1_1 TackOD1 Zn_ribbon_10 zf-C2H2_7th_ZNF462 CEBP_ZZ DZR Zf-C2H2_ZNF451_6th
Other DBs
NCBI-GeneID: 36393120
NCBI-ProteinID: XP_024514660
LinkDB
Position
12:join(335308..335336,335390..335411,335520..335641,335767..335853,335922..336033)
AA seq 123 aa
MPTLKFCGECNNLLYPKSDNNAKVLLYQCRNCNYTENATVEPGMAGCVYKHDLLTVAREQ
PGETKDLDTDPTLQRSAIECPACHHHGAVFFQDQGRRITTNMTLFYYCTNCKHLFRDPTV
RHR
NT seq 372 nt   +upstreamnt  +downstreamnt
atgccaactcttaagttctgtggcgaatgcaacaaccttctttaccccaagtccgataac
aacgccaaagttctcctctatcagtgccggaattgcaactatacagaaaatgctacagta
gaacctggaatggcgggatgtgtgtacaagcatgatctcttaacggtcgccagagaacaa
cccggagaaacgaaggatctggacacggatcccacccttcaacgttcggccattgagtgc
cccgcttgtcatcatcatggtgctgttttcttccaagatcagggtcgtcgtatcacaaca
aatatgactcttttctactattgcaccaactgtaaacatcttttccgagatcctactgtc
agacaccgataa

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