Cryptococcus deneoformans JEC21: CNL06350
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Entry
CNL06350 CDS
T00243
Name
(RefSeq) RNA cap binding protein, putative
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNL06350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cne03019
]
CNL06350
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CNL06350
mRNA degradation factors
5'-3' decay
Lsm complex
CNL06350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
3254857
NCBI-ProteinID:
XP_568159
UniProt:
Q5K8A9
LinkDB
All DBs
Position
12:join(757175..757229,757331..757399,757523..757638,757695..757772,757840..757929)
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AA seq
135 aa
AA seq
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MDALIPFTTSGSLVDLVDKKVLVILRDGRKLIGLFRSYDQFANFLLESCVERLHYKLEYA
DKDIGVLLVRGENVVALGEIDLIAEDMVPLQQVNVQEIEEKISAENKQRERDHAVKESVL
SKMGFVNEGKEGDAY
NT seq
408 nt
NT seq
+upstream
nt +downstream
nt
atggacgctctcatcccgttcacgacttctggttcactggttgaccttgttgacaagaaa
gtcctcgttatcttgcgagacgggaggaagttgataggcttgtttaggagttacgaccaa
tttgccaacttccttcttgaatcgtgtgtagagagattacactacaaacttgaatatgca
gacaaggatattggagtgttgttagtgcgaggagagaacgttgtggctttaggagaaatt
gatctgatagcggaagatatggtacctttacaacaagtaaatgtacaagaaatcgaggaa
aagatatccgctgagaacaaacaacgagaacgagaccacgctgtaaaagaatctgtgtta
tcaaagatgggctttgtgaacgagggcaaggagggcgatgcatactag
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