Cryptococcus neoformans var. neoformans JEC21: CNM00130
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Entry
CNM00130 CDS
T00243
Name
(RefSeq) hypothetical protein
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
cne
Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03022
Basal transcription factors
cne03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CNM00130
09124 Replication and repair
03420 Nucleotide excision repair
CNM00130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cne03021
]
CNM00130
03400 DNA repair and recombination proteins [BR:
cne03400
]
CNM00130
Transcription machinery [BR:
cne03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CNM00130
DNA repair and recombination proteins [BR:
cne03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CNM00130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
3255057
NCBI-ProteinID:
XP_024513980
LinkDB
All DBs
Position
13:complement(join(28893..29119,29208..29346,29457..29597,29654..29973,30035..30185))
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AA seq
325 aa
AA seq
DB search
MYRPFQILDQGIEEGLKEVVREEEGKLNTEGAGFINQPPAMVSALTKALCFINRRISPSV
PADPTALPLSSDPNSGTSDTSGGLLPSKEVRILVINATPGAAVGGRADPDGRPGGGDGAE
KENGDANEEERKNQRRQQRMRGGYVGLMNCVFAAQKAKVPIDILSLPPSTIDSSPPVFLQ
QAAHLTDGVYWQWNGRGGLLQYLHSIYLTPPSLRHNPFVTPPQDAVNFRAVCFCHHRTLD
VGFVCSVCLSIFCEPKPICAMCKTRFPIKSIPRLRTLAGLNTRIQVPDTVVKPPAPKSSS
TNATGGKAGVTGRKGDDRGEPIVID
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgtacaggccgttccagattttggatcaggggattgaagaagggctaaaagaagttgtg
agggaggaagagggaaaattgaataccgaaggcgccgggtttataaaccaacctcccgcc
atggtctcggcactcactaaagctctctgcttcattaaccgacggatatcaccttcagtc
cctgcagatccaacagccctcccactatcttcagacccaaatagcggcacctcggatact
tctggcggccttttaccaagtaaagaagttcggatattagttataaacgcgactcccgga
gctgccgtgggaggtcgagcggatccggatggtcgtccaggaggaggcgatggggcggag
aaggaaaatggggatgcaaacgaagaagaacggaaaaatcagagacggcaacaacgcatg
cgcggtggttatgtcggactgatgaactgtgtctttgccgctcaaaaagctaaagtcccg
atcgatatcctgtcccttcctccatcgacgatcgattcttcccctcccgtcttcttgcaa
caagccgcccatctgacggatggagtgtattggcaatggaatggaagaggcggtttgctc
cagtatcttcacagtatatacctcacaccaccttctctccgacataacccgttcgtcacc
ccgccacaagacgctgtcaactttcgtgcagtatgtttctgtcatcacaggacgttggac
gtgggattcgtatgtagcgtgtgtctctccatcttctgcgaaccaaaacccatctgtgca
atgtgtaaaacacggtttcctatcaagtccattcccagactccggacgctggccgggttg
aatacgaggatccaagtgcctgatacggtcgtgaaacccccggcaccgaaatcgagcagc
acaaacgccacaggaggaaaggccggagttacagggaggaagggagatgataggggtgag
ccaatcgtgattgattag
DBGET
integrated database retrieval system
