Cryptococcus deneoformans JEC21: CNN01190
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Entry
CNN01190 CDS
T00243
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03022
Basal transcription factors
cne03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CNN01190
09124 Replication and repair
03420 Nucleotide excision repair
CNN01190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cne03021
]
CNN01190
03400 DNA repair and recombination proteins [BR:
cne03400
]
CNN01190
Transcription machinery [BR:
cne03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CNN01190
DNA repair and recombination proteins [BR:
cne03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CNN01190
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Motif
Other DBs
NCBI-GeneID:
3255468
NCBI-ProteinID:
XP_568563
UniProt:
Q5K741
LinkDB
All DBs
Position
14:join(360295..360413,360493..360609,360663..360791,360842..361057,361107..361236,361275..361566,361630..361890,361949..362130)
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AA seq
481 aa
AA seq
DB search
MVQPFVSAPKKDATKQASPTLALDIFLDNQHQSYFEELYRLLPPVCRQIILHALWSHHPL
RTVDVKLLLQMDVHAPLEECDEVMRPAIDRKVLHPMHYKKQRMQWSLNDSFKKGLRNALT
GLGTSNSFGVPFERHQATDLDLPSEDELVAYGEDTFESILKYMVSSGLGTEFSGSRPQPE
VLQLLHTSGLMTDSVDMNGRNPNINRLTITSKGFQFLLEKRQTQLWEILMYYLSAKEANS
ERSSEVLSMFFSLGCMQLGQDYSASNSFPGAQEALDDLAQYGFIYKSSPDSDQFWPTHLA
TSLCSGDASAIQSQSADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGK
LDRQHVKAAMEKGISARQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLYLWDRERNRLQTE
ETVMYEFFSKELFDDTVNEAKANAALQHAAISQKLLFIEPHTKPAITEFVKQRQNVLRGG
Y
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggtacaaccattcgtttcagctcccaagaaggatgcgaccaaacaggcatcgccgaca
ttggctcttgacatctttctcgataaccagcaccagtcgtattttgaggagctctacaga
ttactaccgccagtatgccgtcaaattattctccatgccttgtggtcccatcatccatta
cggacggtcgatgtcaagctgcttctccagatggatgtccatgctcctttagaagaatgc
gacgaggtcatgcgaccagctatagacaggaaggtcctccatccaatgcattataagaaa
cagagaatgcagtggtccttgaatgattctttcaagaagggcctgagaaatgccttgaca
ggattaggaacatcaaattcgttcggtgtaccctttgaaagacatcaggcaactgacctt
gatcttccctccgaggacgagctcgtggcgtatggcgaggatacgtttgagtctattctc
aaatacatggtgtcttccggtctcggtacagaattctctggatccagaccacagcctgag
gtcctccagctcttacataccagcggcctcatgacggattctgtcgatatgaacggaaga
aatcccaatataaatcggctcacaatcacttccaaaggctttcaatttttgctcgagaag
agacagactcagttgtgggagatactcatgtactacttgagtgccaaagaagcaaactct
gaacggtcatccgaggtcttgtcaatgttcttctccctcggatgtatgcaactaggacaa
gactattccgcgtccaactccttccctggcgctcaagaagctctcgacgacctcgcccaa
tacggtttcatttacaaatcatcgcctgacagcgatcaattttggcccacccaccttgcc
acctctttgtgttccggcgacgcttctgccatccagtctcagagtgcagacgacaagcgt
ttcctaatattggaaaccaattacaaaatttacgcatatacttcaaacgagctcgagatc
gccatccttaatctctttgtcgacattcgcattcggtaccccaacctcgttgtaggaaaa
ctcgatcgtcagcacgttaaagccgccatggaaaagggtatctcagcccggcagatcatc
gcctatttgtccagtcatgcccatccacaaatgtacaactctcccccaccattattacat
cccaccattgtcgatcaactttatttatgggatcgagagaggaatagattacagacggaa
gagactgttatgtacgaattcttcagcaaagaactctttgacgatactgtcaatgaagcc
aaagcgaatgcggctctacagcatgccgctatatctcaaaaactattattcatcgagcca
catacgaagcctgcgatcacagaattcgtcaaacaaagacagaacgtccttagagggggc
tattag
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