Calditerrivibrio nitroreducens: Calni_0292
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Entry
Calni_0292 CDS
T01364
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cni
Calditerrivibrio nitroreducens
Pathway
cni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Calni_0292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cni03021
]
Calni_0292
03019 Messenger RNA biogenesis [BR:
cni03019
]
Calni_0292
Transcription machinery [BR:
cni03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Calni_0292
Messenger RNA biogenesis [BR:
cni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Calni_0292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA
AAA_25
ATPase_2
NACHT
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ADR18205
UniProt:
E4TJV4
LinkDB
All DBs
Position
300675..301916
Genome browser
AA seq
413 aa
AA seq
DB search
MNLDDLKKKSVEELLSIAEGINIENAPNMLRQELIFEILKATSQRNGQIYGQGVLEILPD
GFGFLRSQDYNYLPGPDDIYVSPAQIRKFGLRNGDTIAGEIRPPRDNEKYFALLKIESIN
FDEVKLHRNLFENLTPLFPDERIDLEAFPTHYDTRIMNLIAPVGKGQRGLIVAPPKTGKT
MLLKSIANSITKNHPEIYLIILLIDERPEEVTDMQRSVKAEVVSSTFDEPAYRHVQVAEM
VLNKAKRLVEHKRDVCILLDSITRLARAYNSIEPSSGKVLSGGVDSNALHKPKRFFGAAR
NIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLVEKRIFPAIDINRSGT
RREELLLAKDEINKVWILRRFLSGMNSVDAMEFLLEKIKDTKTNKEFLNSMNK
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
gtgaatctggacgatttaaagaaaaaatctgttgaagaattattgtctattgctgagggg
ataaatattgaaaatgctcccaatatgctaagacaggagctaatttttgaaatattaaag
gccacaagtcagagaaatggtcagatatatggtcagggggttctggagatacttcctgat
ggctttggttttttgagatctcaggattataactatttgccagggcctgatgatatctat
gtctcccctgcacagattagaaagtttggtcttagaaatggtgatacaatagcaggtgag
ataagacctccaagggataatgaaaagtattttgcacttctcaagattgaaagtatcaat
tttgatgaggtaaaacttcataggaacctttttgaaaaccttaccccccttttcccggat
gaaagaattgatcttgaagctttcccgacacattacgatacaagaattatgaaccttatt
gcgccagttggaaaaggtcaaagggggcttattgtagctccacctaaaacgggtaagacg
atgcttcttaaatctattgcaaatagtattaccaagaatcacccggagatatatcttatc
atcctcctcatagatgagagacccgaagaggttacagacatgcagaggtctgtcaaagca
gaagtggttagctctacatttgatgagcccgcttatagacatgttcaggtggctgaaatg
gtacttaacaaagcaaaaagactagtggaacataaaagggatgtttgtatacttcttgat
agtattactcgccttgcaagagcttacaactctattgaaccttccagcggtaaagttctt
tcgggtggtgtagattctaatgctttgcacaagcccaaaaggttttttggagctgccaga
aatattgaagagggtggtagccttactataatagccactgctctcatagatacaggttcc
agaatggatgaggttatttttgaggaatttaaaggtaccggtaatatggagcttcatctc
gacagaaaacttgtggaaaagaggattttccccgctattgatataaatagatctggtacc
agaagggaggaactgcttctggctaaggatgaaattaataaggtgtggatattgagaaga
tttttaagtggaatgaattctgtggatgctatggaatttttacttgaaaagattaaggat
acaaaaaccaacaaagaatttttgaactctatgaataaatag
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