Calditerrivibrio nitroreducens: Calni_1003
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Entry
Calni_1003 CDS
T01364
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cni
Calditerrivibrio nitroreducens
Pathway
cni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Calni_1003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cni03019
]
Calni_1003
03009 Ribosome biogenesis [BR:
cni03009
]
Calni_1003
Enzymes [BR:
cni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Calni_1003
Messenger RNA biogenesis [BR:
cni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Calni_1003
Ribosome biogenesis [BR:
cni03009
]
Prokaryotic type
rRNA helicases
Calni_1003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ERCC3_RAD25_C
Helicase_RecD
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADR18914
UniProt:
E4THY4
LinkDB
All DBs
Position
1052907..1054493
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AA seq
528 aa
AA seq
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MNELTKFKELGLSENVLKALSKKGFEEPTPIQELVIPKLLQGERDIVGQAQTGTGKTAAF
GLPLIELLDDKSPFVQAIVLTPTRELALQVAEEMNSLKGKKRLNIVPIYGGQSMELQLRR
LENNAHIVVGTPGRVIDHINRKTLRLNKLKFMVLDEADEMLNMGFIEDIEEIIKHTNEDK
RMLLFSATMPKEILNIAKKYMKDYEVLAVKTKQLTTELTEQIYFQVREEDKFEALCRIRD
MEKEFYGLIFCRTKVDVDTVCNRLIDRGYNAEALHGDISQYQRERILKRFKAKQINMLVA
TDVAARGIDISDLTHVINYSLPQDPESYVHRIGRTGRAGKEGTAITFVTPEEYRKLLYIM
KIAKADIKKKKVPSVSEVIQAKKERIKDEVSDILSDNMSNDYFELANKLLEEYDPVKIVA
ALLKMNYKDDFEAGSYSEISEVSNVDRKGKARLFIAMGKLENMTPKKIVDFIVDKTGIKE
SDIKEVKVFDKFSFISVPYEDATYIVNIFKKQNRGKRPLVEIAKEAKK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaattaacaaaatttaaagaactggggctatctgaaaatgtacttaaagccctt
tcaaaaaaaggttttgaagagcccacacctatccaggaattggttatacctaaattatta
cagggggaaagggacattgtaggacaggcacaaacaggtacgggtaagacagcagccttt
ggattgcctttaatcgaactgcttgatgacaaatcaccatttgtacaggcgatagtttta
acacccacaagggagcttgcccttcaggtggcggaagagatgaattctctaaaaggaaaa
aaaaggctcaatattgttcctatatatggtggtcagtctatggagcttcagctcagaaga
cttgaaaataatgcccatatagttgttggtacgccgggcagggtgatagatcatataaac
agaaagacactgcgtttgaataaattaaaatttatggttttggatgaagccgatgaaatg
ctaaacatggggtttattgaagatattgaagagattataaaacatacaaatgaagataag
aggatgcttctcttttccgcaacaatgcccaaagagattttgaatatagctaaaaaatat
atgaaagattatgaggttttagctgtaaaaacaaaacagttaaccacagaacttacagag
cagatatattttcaggttagagaagaggataaatttgaagccctttgtagaataagggat
atggaaaaagagttttatggactaattttctgtagaaccaaagttgatgtggataccgtt
tgtaatagactcatcgatagggggtacaatgcggaggcccttcatggggacatttctcag
tatcagagggagaggatactaaagcgctttaaggctaaacagattaacatgcttgtggct
acggatgttgctgcaagaggtatagatatcagtgacctaacacatgtaataaactattct
ttgccacaagatccggaatcttatgtacatagaattggtaggacaggaagggcagggaaa
gaaggaaccgctattacatttgtgaccccagaagaataccgtaagctgttgtatattatg
aaaattgcaaaagctgacataaaaaagaaaaaagtaccctctgttagtgaagttattcaa
gctaaaaaagagaggataaaggatgaagtttcagatattttaagcgataatatgtcaaat
gactattttgagcttgccaataaacttcttgaagaatatgatcctgtaaaaattgtagca
gctctgctgaagatgaattacaaggatgattttgaggctggtagctattctgaaatttct
gaagtttcaaatgttgatagaaaaggtaaggcaagactatttattgcaatgggaaagctt
gaaaatatgacacctaaaaaaattgtggactttattgttgacaagactggtataaaagaa
tcagatataaaagaggttaaagtatttgataaattctcttttataagtgtaccttatgaa
gatgcaacctatattgtaaacatatttaaaaagcagaacagggggaagagacctcttgtg
gagattgcaaaagaagcaaaaaagtga
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