Calditerrivibrio nitroreducens: Calni_1110
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Entry
Calni_1110 CDS
T01364
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cni
Calditerrivibrio nitroreducens
Brite
KEGG Orthology (KO) [BR:
cni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cni03016
]
Calni_1110
Enzymes [BR:
cni01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Calni_1110
Transfer RNA biogenesis [BR:
cni03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Calni_1110
Prokaryotic type
tRNA splicing ligases
Calni_1110
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
LbH_EIF2B
Motif
Other DBs
NCBI-ProteinID:
ADR19021
UniProt:
E4TIA5
LinkDB
All DBs
Position
complement(1173638..1174735)
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AA seq
365 aa
AA seq
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MLRIKGDFGEADIFTDNVDETTISQVKNLCNSVIAKNSKIRIMPDCHAGAGCVIGTTMTI
KDKIVPNLVGVDIGCGMYVVKLKDFKDPELLDEIIKNFIPSGKSVRNKTYKRVEEIEIDK
LKSKKEVDIQRGYLSIGTLGGGNHFIEVAKGEGYYLIIHSGSRHPGKQVAEYYQSLAKKI
CQKKGIKIANGLEYLEGEEMENYLNDMKIMQNYAKINRESMAEIIIDKMKLEALDSFHTI
HNYIDIDNSILRKGAVSAKKGERILIPLNMKDGSLICLGKGNPNWNFSAPHGAGRIMSRN
KAKEVITLEQFKEAMKGVFSTTINKWTLDEAPQAYKSPDEIIKSIGETVEILERLIPVYN
FKAAE
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgctgagaatcaaaggtgattttggagaagctgatatttttaccgataatgtggatgaa
accacaatatcacaggtgaagaatctttgcaatagtgtgatagccaaaaattcaaaaatc
agaataatgcccgattgtcacgccggtgccggctgcgttattggtacaaccatgacgata
aaggataagattgtgcctaacctggtgggggtggatatagggtgtggaatgtatgtggtg
aagttaaaggattttaaagatccagaactacttgacgaaattatcaaaaactttatccca
agtgggaagtctgtgagaaacaaaacttataaaagagttgaggagattgagatcgataaa
ctgaagtcgaaaaaagaagttgatattcaaaggggatatctaagcattggtactcttggt
ggaggtaatcactttattgaagtggcgaaaggggaggggtattatctaataattcactcc
ggcagtagacatcctggtaagcaggtggcggaatactatcagagtctcgcaaaaaagatc
tgccagaagaaggggataaaaattgcaaatggtttggagtatcttgaaggtgaggagatg
gagaattatctgaatgatatgaaaattatgcaaaattatgcaaagataaacagagaatct
atggcggagataattatcgacaaaatgaagctggaagctcttgattctttccatacaatt
cacaattacatcgatatcgataatagtattttgagaaaaggtgcagtgtctgcaaaaaag
ggggaaaggattttgataccgcttaatatgaaagatggttccctgatatgtctggggaag
gggaatccaaactggaatttttcagccccacatggagcagggaggattatgtcaagaaac
aaagctaaagaggttataacactggagcagttcaaagaggcgatgaagggggtattcagt
accaccattaataaatggacccttgatgaggctcctcaggcatacaaatcgccggatgaa
atcattaaaagtattggtgagacagtagaaatactggaaagacttatcccggtttacaac
tttaaagcggcggagtaa
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