Caloenas nicobarica (Nicobar pigeon): 135985144
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Entry
135985144 CDS
T11056
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
135985144 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnic03021
]
135985144 (SMARCC1)
03036 Chromosome and associated proteins [BR:
cnic03036
]
135985144 (SMARCC1)
Transcription machinery [BR:
cnic03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
135985144 (SMARCC1)
Chromosome and associated proteins [BR:
cnic03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
135985144 (SMARCC1)
PBAF complex
135985144 (SMARCC1)
GBAF(ncBAF) complex
135985144 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT_2
Chromo
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
135985144
NCBI-ProteinID:
XP_065484219
LinkDB
All DBs
Position
2:1094686..1176394
Genome browser
AA seq
1116 aa
AA seq
DB search
MRGVRRVGGAGPRRRRSARVTMAAALAGGTGPAAAVAVSGGPGLAALSVARRKDGGPSGK
FWESPDTVSQLDSVRVWLGKHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAF
TKLPAKCFMDFKAGGTLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQ
NNCLSRPTIYLIPDIELKLANKLKDIVKRHQGTVTEEKSKATHHVYPSPTSTDDDEWLRP
VMKKDKQVLVHWGFFPDSYDTWVHANEIDAEIEDPPIPEKPWKVHAKWILDTDVFNEWMN
EEDYEVDENRKSVSFRQRISMKNEEPVRSPERRDRKAAASTRKRKHSPSPPPTPVESRKK
TGKKGQAALYGKRRGQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKG
GTVADLDEQDEETVATGGKEDEDPNKGDQSRSIDPGEDNVTEQTNHIIIPSYASWFDYNC
IHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAV
MRVHAFLEQWGLINYQVDPESRPMAMGPPPTPHFNVLADTPSGLMPLHIRTPQVPAAQQM
LSFPEKHKEKPTDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDW
NKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFL
ASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCI
AGTGPDEPEKIDGAEEEKMETETDGQQSEKVENKAESEIEEGDKAQEGEDERNAEKEQDG
EAPAEPKPEEKEAEENKENVDASKDKETEAGKRKVEHEISEGNVATAAAAALASAATKAK
HLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNF
HMEQLKYAELRARQQMEQQHSQNPQQPHQHSGGPGLNPLGTAAHPGLLPHQQPPPYPMMH
HQMPPPHPPQPGQMPGPGSMMPGQPMPGRMMPNVPTNIHPAGAPPPGMSPMAGNLIGPRV
PLAAPNGMYPPPAQPPPAAEGLTPPPAAAPPASAAP
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcgtgaggcgggtgggaggcgcagggccgcggcggcggcgctcggctcgggta
acaatggcagcggcgctggccggcgggacggggcctgcggccgccgtggcggtgagcggc
gggcccggcttggcggctctctccgtggcgcggcggaaagacggcggccccagcgggaag
ttctgggagagcccggacaccgtgtcccagctcgactcggtccgcgtctggctggggaag
cactacaagaagtacgtccaggcagatgctcctaccaacaaaacgctggctgggctggtg
gtgcagctcctgcagttccaggaagatgcctttgggaaacatgtcaccaatcctgccttc
acaaagctgcctgcaaagtgcttcatggatttcaaagctggaggtacattatgtcacatt
cttggtgctgcttacaaatataagaatgaacagggctggcggaggtttgacctgcagaat
ccatcccgaatggatcgaaatgtggagatgttcatgaacatcgagaagacactagtgcag
aacaactgtctgagcagaccaaccatctacctcattccagatatagagctgaagttggct
aataaattgaaggatatcgtcaaacgtcaccagggaacagtaactgaggagaaatccaag
gccacccaccacgtttatccaagtcctacctcaacagatgatgatgaatggttgagacct
gtgatgaaaaaagacaagcaggtgctggtacactggggcttttttccagacagctacgac
acttgggttcatgccaatgaaatagatgctgaaattgaggatcctcccattcccgaaaag
ccgtggaaggttcacgccaagtggattttggacacagacgtattcaatgagtggatgaat
gaggaggattatgaggtagacgagaacaggaaatcagtgagttttcggcagagaatctcc
atgaaaaacgaagagcctgtacgtagtccagagaggagagacaggaaagcagcagcgagt
acaaggaagagaaaacattctccttctccacccccaactcctgtggagtccagaaaaaag
acgggcaagaagggacaagcagccttgtatgggaaaagacgagggcagaaagaagaggat
gagcaagaagatctgacaaaggacatggaggatcccaccccagtacctaatatagaagaa
gtggtacttcccaaaaatgtgaacccaaagaaagacagtgaaaacacacccgtgaaagga
ggaacggtcgcagacctcgatgaacaggatgaggagacagtggcaactggaggcaaggaa
gatgaagatcccaacaaaggtgatcagagtcggtcgatcgatcctggtgaagataacgtc
acggaacaaaccaaccacatcattattccgagctatgcatcttggtttgactacaactgt
attcatgtgattgaacgtcgtgctcttcctgaattcttcaacggcaaaaacaagtccaag
actccagaaatatacctggcttatcgcaacttcatgatcgacacctatcgcttaaaccct
caggagtacttgaccagcacggcgtgcaggaggaacctgacgggagacgtgtgcgccgtc
atgagagtacacgctttcctggagcagtgggggctcatcaactaccaagtggacccagaa
agccgccccatggccatggggcctcccccgactccccacttcaacgtcctggccgatacg
ccctccgggctgatgccgcttcacatccgcacgccgcaggttccagctgctcagcagatg
ttgagttttcctgagaaacacaaagagaaaccaactgatttgcagaactttggccttcgc
acagacatttactcaaaaaagactttagcaaagagtaaaggtgcaagtgctggacgagag
tggacggaacaagagacattgctgctcttagaagctctggagatgtacaaagacgactgg
aacaaggtctcggagcacgttgggagccgtacccaggacgagtgcattctgcatttcctg
cggctccccatcgaagacccgtatttggagaactcggacgcgtcgctgggcccgctggcg
taccagcccgtgcccttcagccagtctggcaacccggtgatgagcactgtggcttttctg
gcctcggtggtggatccccgcgtggcgtccgctgcggcgaaggctgccttggaggaattt
tcccgagtcagagaggaggtaccgctggagctcgtggaagctcacgtgaagaaggtccaa
gaagcggcaagagcctccgggaaggtggatccaacgtacggactcgagagcagctgcatt
gccggaacgggtccagacgagccggagaaaatcgatggagctgaagaagaaaagatggaa
acagagacagatgggcagcagtctgagaaggttgaaaacaaagcggagagtgaaattgag
gaaggcgataaagcacaagaaggagaagatgagcgaaatgcagaaaaagagcaagacggc
gaagcgcccgcggagcccaagccagaagaaaaggaggcggaagagaacaaggagaacgtt
gatgcgagcaaagacaaagaaaccgaggctgggaagaggaaagtggaacacgagatctcg
gaaggaaacgtagcaacagctgcagctgctgccctcgcctcagctgccaccaaagcaaag
cacctggcagcagtggaagaaagaaagatcaagtccctggttgcccttttggtggaaacg
cagatgaagaagctggagatcaaacttcgccattttgaggagctggaaaccattatggac
agagagaaagaggcactggagcagcagaggcagcagttgctgacggaacgccagaatttc
cacatggagcagctgaaatacgccgaattaagggctcggcagcaaatggagcagcagcac
agccagaacccccagcagccccaccagcactcgggggggcccgggctgaaccccctgggg
acagcggcacatccagggttgctgccccaccagcagccgcccccgtaccccatgatgcac
catcagatgccgccgcctcacccgccgcagccaggtcagatgccagggccgggctcgatg
atgccgggacagcccatgccgggccggatgatgccgaacgtcccgaccaacatccatccc
gccggagcccccccgcccggcatgtcccccatggcaggaaacctcatcggacctcgcgtt
cctctggcagctcccaacggcatgtatccccctcccgcgcagccgcccccggcagcagaa
gggctgaccccccctccggccgcggcccccccggcctccgccgccccctga
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