KEGG   Caloenas nicobarica (Nicobar pigeon): 135985203
Entry
135985203         CDS       T11056                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
cnic  Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04382  Cornified envelope formation
cnic04510  Focal adhesion
cnic04512  ECM-receptor interaction
cnic04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cnic00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    135985203 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    135985203 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    135985203 (COL4A1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    135985203 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cnic04147]
    135985203 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:cnic00536]
    135985203 (COL4A1)
Exosome [BR:cnic04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   135985203 (COL4A1)
Glycosaminoglycan binding proteins [BR:cnic00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   135985203 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 135985203
NCBI-ProteinID: XP_065484345
LinkDB
Position
1:153829112..153959093
AA seq 1666 aa
MRLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGSPGLKGDTGEPGLPGTKGTRGPPGASGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLLPPSLLKGDKGFPGQPGLPGPPGTP
GFQGAMGPQGPPGEPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPHMK
EKGSEIIKGEKGDPGEKGEQGTPGFPGSGFKGEKGEPGKPGPRGKPGKDGDPGPKGEAGL
PGGFGIPGRPGEPGAKGDKGERGFPGPPGRVIDSGPVGEKGEPGASGLPGLKGQKGEKGF
PGIQGIPGPPGRPLPDRVGSPGVPGERGEKGEKGSPGFPLPGPPGRDGFPGPPGLPGPPG
PPGVTDGIDQCQQGEPGAPGTPGLPGRDGFPGEMGEKGDKGESCALCDKVGPPGLPGPQG
PPGPAGFPGQSGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGAKGEPGDFSYDSILKGEK
GDPGFPGQPGTPGREGRPGKDGLPGLQGPKGASGTAGLKGERGPPGQPGFPGVRGERGFP
GPPGIGTAGLPGDKGDRGFAGTPGLPGLPGAKGEAGRTVPLPGPPGADGLPGPPGFPGPQ
GDKGYPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPGTPGLDGLPG
VPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGSPGLPGLRGEQGFPGIPGQQGFRGD
PGLPGLQGLQGPPGAPGLGPQGSPGPTGQPGPQGPPGFPGIKGERGFPGIPGLDMPGPKG
DKGIQGQPGVPGSVGLPGLPGPQGDIGLKGSAGLKGEMGVMGTPGLPGTPGPVGDRGLPG
EKGSQGFKGVVGPQGDPGVKGDKGEAGLPGKPGTMDNMDMVSLKGQKGDQGEKGDHGATG
EKGLQGEYGDPGIPGRDGEPGTPGHPGPKGDQGPPGYPGDPGLPGQKGSVGEMGLPGTPG
EKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGSPGEKGEPGRTGSPGLAGDKGE
KGSVGLPGMLGAPGPKGSPGMAGFPGSPGRHGEKGEKGLPGLSGIPGLKGEPGEPGIPGP
AGSIGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGAKGDMGFPGSPGSPGIP
GLKGEPGYAGPPGPKGSQGLPGLPGSAMEGPKGDRGPQGQPGLPGLPGPTGPPGPPGVKG
AKGEQGSNGWPGTPGSPGVKGDPGFQGLPGSPGLPGDIGQKGDLGPPGVPGVPGPKGSPG
FPGLKGERGDQGLPGSKGLQGPPGPPGAFQLVKGDPGLPGPVGPVGLKGFPGLPGPKGQQ
GVTGPAGVPGPPGSPGFDGQPGQKGEVGPYGPPGPRGFPGPPGPEGLPGAMGPPGAPSVA
HGFLVTRHSQTIEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFL
FCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAPAMVIAVHSQ
TIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCN
YYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq 5001 nt   +upstreamnt  +downstreamnt
atgcggctctggctgggcttcgggctgctgctgagcgccgagctcagcgccgtgtctgcc
gcgggttgttcgggttgtggaaaatgtgactgcagtggagtaaaagggcaaaagggagaa
cgaggcttgccgggactacagggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccacctgggtcaccagggcttaagggtgatactggagaaccaggactaccaggaacaaag
ggaacaagaggccccccaggagcatcaggcttcccaggaaacccaggccttcctggaatt
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggcacaaagggt
gaaagaggtccagtaggtcccccgggtttaccaggactgactgggagcataggaccccca
ggacctcctggaatgaagggagatccaggtgaagtgattggtcttttacctcctagtttg
ctaaaaggtgataaaggctttcctggccaacctggactacctggtccacctggaactcca
ggatttcagggagcaatggggccacaagggcctccaggagaaccaggtcccccagggcca
ccaggactcccaggcgagaagggctacatgggcttgggctttcagggtcccaaaggtgaa
aagggagaacaaggagtaaggggcccaccaggcccaccaggaccagcaccacatatgaaa
gaaaaagggagtgaaatcataaagggagaaaagggtgatccaggtgaaaagggtgaacag
ggaaccccaggatttccaggttctggtttcaaaggagaaaagggtgaacctgggaagcct
ggtccacgtggaaagcctggaaaagatggtgacccaggaccaaaaggagaagccggtttg
cctggtgggtttgggattccaggacgacccggggaacctggtgcgaagggtgacaaaggt
gaacgaggttttccaggacccccaggaagagttatagattctggaccagtaggagaaaaa
ggagagcctggagcttcaggtttgcctggactgaaaggtcaaaaaggtgaaaaaggtttc
cctggaatacaaggaatcccaggacctccaggtcgaccacttccagacagggtaggatca
cctggtgtccctggagagagaggtgaaaaaggtgaaaagggttctccgggattcccttta
cccggaccccctggaagagacggtttcccaggtccgccagggttgcctggcccaccaggt
cctccaggcgtaacagacggaatcgatcaatgccagcagggagaacctggtgcaccaggt
actcctggacttccaggaagagatggatttccaggagagatgggagagaaaggtgacaaa
ggtgaatcttgtgccttatgtgataaagtaggacctcctggacttccaggaccacaaggg
ccaccaggtccagcaggtttcccaggacaatcgggtttcaagggtgacagaggcttacct
ggacttgatggccttccaggggtacctgggccccccggcactccaggacttatgggcagc
cctggggcaaaaggagaaccaggagatttttcttacgattctatcctgaaaggtgaaaag
ggagatcctggtttcccaggacaaccaggtactcctggaagagaaggcagaccagggaaa
gatggattgccaggcctccagggtccgaaaggagcatcgggtacagctggcttgaaagga
gaacgtggtccccctggccaacctggattccctggagtacgtggtgaaagaggttttcct
ggccctcctgggataggcactgcagggttacctggtgacaaaggagacagaggctttgct
ggaaccccaggtttaccaggccttccaggagcaaagggtgaagcaggacgaactgtacca
ctccctggacctcctggagcggatggtcttcctgggccacctggtttccctggaccccaa
ggtgacaaagggtatcctgggcttccaggtagacccggcctaccaggagaaaaaggtgct
gttgggcagccaggtatagggttccctggacctccaggacccaaaggtttccaaggtcag
cctggctcacctggtctgccggggactccaggaactcctggcctggatggtttgccaggt
gtaccaggtctacaaggtcaaaaaggtgaacctggtgtaggtctccctggcccgaagggg
ttgccaggccccccgggcccggctggcatccctggagaaaaggggagtccaggactgcct
ggcttacgtggcgagcaaggcttcccgggcatacctgggcagcaaggattcagaggtgac
cccggcctcccaggactgcagggcttgcagggccccccaggtgcgccagggctgggcccc
cagggatcgccaggacccaccgggcagccgggaccccagggaccaccaggatttcctgga
ataaaaggagaaaggggcttccctggtatcccaggtctagatatgccaggaccaaaaggg
gataaaggtatccagggccagcctggagtaccagggtctgtggggttacctggcctgcca
ggtccgcagggggacattggactgaaaggatcagcaggactcaaaggagaaatgggagtt
atgggaactcctgggttgccaggaactcctggaccagttggagatcgagggttgcctggt
gaaaaaggtagccaaggtttcaaaggtgtagttggaccacaaggtgatcctggtgtcaaa
ggagataaaggtgaagccggtctcccaggaaaacccggaacgatggacaacatggacatg
gttagtctcaaaggccaaaagggagatcaaggagaaaaaggggaccatggagcaacagga
gaaaaagggttacaaggggaatatggagacccaggaattccagggagggatggtgaacct
ggtactccaggacatccaggaccaaaaggtgatcagggtcccccagggtacccaggggat
ccgggacttccaggacaaaaaggatcagttggtgaaatgggtttgccaggaacacctgga
gaaaagggtctcccaggagtaccaggttcaccaggcacaccagggttccctgggcaaaaa
ggtgaaaaaggagacaaaggagcaccaggttttcctggaattggctttccagggtctcct
ggtgagaagggagaaccaggaaggacaggtagtccaggcttggctggagataagggtgaa
aagggtagtgtaggacttcctggaatgctgggtgccccaggtcccaaaggatcccctggc
atggcaggatttccagggagccccggccgccatggagaaaagggtgaaaaaggacttcct
ggcttaagtggcattccaggcttaaaaggagaaccaggtgaacctggcattccgggtcct
gctggttccattggacagaaaggtgaaccaggttatgatgggattccaggtgcagctggt
gcaaagggtgaacaaggtcttccaggtagaggacttccaggatttcctggtgcaaaggga
gataaaggtgcgaaaggtgacatgggttttccaggatccccaggaagtccggggatccca
ggcctgaaaggagaaccaggctatgctggcccaccgggccccaagggcagccaagggctt
cctgggctaccgggaagtgcaatggagggccctaaaggagacagaggaccccagggccaa
cctggccttccaggtttaccaggtccaacagggccaccaggacccccaggtgtgaaaggg
gccaaaggagagcaggggagcaatggctggcctgggactcctgggagtccaggagtcaaa
ggtgatccgggtttccagggattgccaggtagtcctggtttaccaggagatattggtcaa
aagggtgatttgggacctccaggagttccaggtgttccagggccaaaaggatctcctggc
ttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaaggtttacaa
ggcccaccaggcccaccaggtgcttttcagcttgttaaaggagatcctggcttacccggc
cctgtaggaccagtgggtctcaaaggattcccaggacttccaggtcccaaagggcagcaa
ggagtgacaggacctgcaggcgtacctggaccacctggtagtccagggtttgatggtcaa
cctgggcaaaaaggagaagttggtccttatggtcccccagggcccagaggattccctggt
ccaccaggccctgaaggtttgcctggggctatgggcccaccaggtgcaccatctgttgct
catggcttccttgttaccagacacagtcaaaccattgaagaaccatcgtgtccatttgga
acaaggctgatttaccatggctactccttgctttatgtacaaggcaatgaaagagcacat
ggccaagatctgggcaccgcaggaagttgtcttcgtaaatttagtaccatgcctttctta
ttctgcaatatcaacaacgtatgtaactttgcatcaaggaacgactattcctactggctg
tccactcccgaacccatgccaatgaatatggctcctatcactggtgataatatcagaccg
ttcatcagcagatgctctgtgtgtgaagctcctgctatggtaatagccgttcacagtcaa
acaattcaaataccaccatgtcctgaaggctggagttcactttggattggttactccttt
gtcatgcacaccagcgctggtgcggagggctctggccaggccctggcatctcccggttcc
tgcctagaggagtttcgcagcgctcccttcattgaatgccatggccggggcacctgcaat
tattatgcaaatgcttacagcttctggcttgccactatagaaaggaatgagatgttcaag
aaaccgactccctcaactctgaaagcaggggatctgcgctcaaatgttagccgttgtcaa
gtctgtatgagaaaaacataa

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