Caloenas nicobarica (Nicobar pigeon): 135985633
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Entry
135985633 CDS
T11056
Symbol
SEH1L
Name
(RefSeq) nucleoporin SEH1 isoform X1
KO
K14299
nucleoporin SEH1
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03013
Nucleocytoplasmic transport
cnic04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135985633 (SEH1L)
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
135985633 (SEH1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135985633 (SEH1L)
04131 Membrane trafficking [BR:
cnic04131
]
135985633 (SEH1L)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
135985633 (SEH1L)
Membrane trafficking [BR:
cnic04131
]
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
135985633 (SEH1L)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
Beta-prop_WDR3_2nd
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
WDR55
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
135985633
NCBI-ProteinID:
XP_065485222
UniProt:
A0A7K6T2K7
LinkDB
All DBs
Position
2
Genome browser
AA seq
419 aa
AA seq
DB search
MFVARSIAADHRDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVK
FAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSP
MIAVGSDDNSPNILAKVQIYEYNENTRKYAKAEALMTVTDPVHDIAFAPNLGRSFHILAV
ATKDVRIFTLKPLRKELTSSGGLTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDG
CVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGIFNASLGSANTSLQNSLNGSSASRYFF
PPLDSPRAGSRWSSHAQLLPPPPLIEHSCDADSANLQYPHPRRRCVSRPLNLLPENEGV
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtggcgcgcagcatcgcggcggatcaccgcgacctcatccacgatgtctccttc
gacttccacgggcggcgcatggcgacctgttccagcgaccagagcgtcaaagtctgggac
aaaagtgaaaacggggattggcattgcactgccagctggaagacacatagtggatctgtg
tggcgtgtgacatgggcccatcctgaatttgggcaggtcttggcttcctgctcttttgac
agaacagcagctgtgtgggaagaaatagtgggagaatcaaatgataaactccgaggccag
agtcactgggtaaagaggaccactctagtagacagtaggacatctgttacagatgtgaag
tttgctcccaagcatatgggtcttatgttagcaacttgttcagcagatggagttgtaagg
atttatgaagctccagatgtgatgaatctcagtcagtggtcactgcagcatgaaatctca
tgtaagctaagctgcagttgtatttcttggaatccttcaagctctcgagcacattctcca
atgatagctgtaggaagtgatgacaacagtccaaatatattggctaaggttcaaatttat
gaatataatgaaaataccaggaaatatgcaaaagcagaagctctgatgacagtcacagat
cccgtacatgatattgcgtttgctccaaatctgggaagatccttccacatcttagctgta
gcaaccaaagatgtacgaattttcacactaaaacctctaaggaaagaattgacttcatct
ggaggattaacaaaatttgaaatacatattgtggcacagtttgataatcacaactcccag
gtgtggcgagtgagctggaatattacaggcacagtgcttgcctcctctggtgatgatggc
tgtgttaggctctggaaggctaattacatggacaactggaagtgtactggtatactgaaa
ggtaacgggagtccagtgaacggtagctctcagcagggaatttttaatgcctctctaggt
tcagccaatacaagcctacagaattcactaaatggatcatctgccagcaggtatttcttt
ccccctctggattccccacgggctggatcgagatggtccagtcatgcccagctccttcct
cctcctcctctgatagagcactcttgcgatgctgactctgccaacctccagtatcctcac
cctcgcagacgatgtgtatctcggcctcttaatctgttacctgagaatgaaggggtttaa
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