Caloenas nicobarica (Nicobar pigeon): 135985913
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Entry
135985913 CDS
T11056
Symbol
SHH
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
135985913 (SHH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cnic01002
]
135985913 (SHH)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cnic00536
]
135985913 (SHH)
Peptidases and inhibitors [BR:
cnic01002
]
Cysteine peptidases
Family C46: hedgehog family
135985913 (SHH)
Glycosaminoglycan binding proteins [BR:
cnic00536
]
Heparan sulfate / Heparin
Morphogens
135985913 (SHH)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
135985913
NCBI-ProteinID:
XP_065485684
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Position
2:complement(9577998..9587631)
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AA seq
425 aa
AA seq
DB search
MDEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG
ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADAEGRLLYSD
FLTFLDREDSSHKLFYAIETRQPRARLLLTAAHLLFVAPQHNESQEGIPSSQALFASRVR
PGQRVYVLGKGGRQLLPAAVHSVSLQEEASGAYAPLTAQGTILINRVLASCYAVIEEHSW
AHLAFAPFRLFQGMLDALCPSGGGTLVGAPATPGIHWYSRLLYRIGSWVLDSDSLHPLGM
VVPSS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaatgctgctgttgacaagaattctcttggtgggcttcatctgcgctctttta
gtctcctctgggctgacttgtggaccaggcaggggcattggaaaaaggagacaccccaaa
aagctgacccctttagcctataagcagtttattcccaatgtggcagagaagaccctaggg
gccagtggaagatatgaagggaagatcacaagaaactccgagagatttaaagaactaacc
ccaaattacaaccctgacattatttttaaggatgaagagaacacgggagctgacagactg
atgactcagcgctgcaaggacaagctgaacgccctggcgatctcggtgatgaaccagtgg
cccggggtgaagctgcgggtgaccgagggctgggacgaggacggccaccactccgaggag
tccctgcactacgagggccgcgccgtggacatcaccacttcggaccgggaccgcagcaag
tacggcatgctcgcccgcctggccgtcgaggccggcttcgactgggtctactacgagtcc
aaggcgcacatccactgttccgtcaaagcagaaaactcggtggcggccaaatcagggggc
tgcttccctggctcagccacagtgcacctggagcacggtggcaccaagctggtgaaggac
ctgagccctggggaccgcgtgctggcagccgacgcagagggacggctgctctacagcgac
ttcctcaccttcctcgaccgggaggacagctcccacaagctcttctacgccatcgagaca
cggcaaccccgagcccggctgctgctgacggccgcccaccttctcttcgtggccccccaa
cacaacgaatcacaggaggggatccccagcagccaggcgctcttcgccagccgcgtccga
ccgggccaacgggtctatgtgttgggcaagggcgggcggcagctcctgccggcggccgtg
cacagcgtctcgctgcaggaggaggcttcgggagcctacgcccccctcaccgcccagggc
accatcctcatcaaccgggtgctggcttcttgctatgccgtcatcgaggagcacagctgg
gcgcatttggccttcgctccctttcgcttgttccaggggatgctggacgccctgtgcccc
tccggcggggggaccctggtgggtgctcctgccacccctggcatccactggtactctcgc
ctcctctaccgcatcggcagctgggtgctggatagtgactctctgcacccgctgggcatg
gtggtaccatccagctga
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