Caloenas nicobarica (Nicobar pigeon): 135986440
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Entry
135986440 CDS
T11056
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
135986440 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnic03400
]
135986440 (MSH6)
DNA repair and recombination proteins [BR:
cnic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
135986440 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Autoind_bind
HVO_0758
Motif
Other DBs
NCBI-GeneID:
135986440
NCBI-ProteinID:
XP_065486436
LinkDB
All DBs
Position
3:105765331..105780569
Genome browser
AA seq
1367 aa
AA seq
DB search
MSRQSTLHRFFTKASPPPPRAAAAAPAPPQAGAGTRRRASGEQNGRDAATSPPGPASNGT
SSGGAPGRAAARRTEAAAEGGRAGAAGQARSVSCEYSPGDLVWAKMEGYPWWPCLIYNHP
TERTIIRGKGKSTRVHVQFFDDSPTRGWVSIKYLRPYKGSSDGETLKGGMFYSTKPEIKK
AMVLADDAMSKDKTKRLELAVCNEPSDTEEEEEEVEQMSESASGNSDDCNSEEDVKSNKR
VMNRESAIKAKRRRVLDSDSDHDGSDVEFKPDVKEAASSEEASSGVDENESTDTETDEES
VAESPVKVPSKRKRREMNKPAKRSSLENERSETLNRAAPVSLEAKSKLTSFAAPESFESQ
ANACSGGSSGFAVWEHEKLEWLQEGKKKDAHRRRQNDPAYDPCTLYVPEDYLNKCTPGMR
RWWQLKSQNFDAVICYKVGKFYELYHMDAVIGVNELGLIFMKGTWAHSGFPETAFGRFSD
VLVQKGYKVARVEQTETPEMMEARCKSMAHPTKFDKVVRREICRIITKGTQTYSILDCDP
SENHSKYLLCIKEKEESSGQRVYGVCFVDTSVGKFHVGQFSDDRHCSRFRTLVAHYTPVQ
VLYEKGNLSVDTQKILKGSLVSCFQEGLISGSQFWNASKTLKVLLEEEYFKEKQNSENGC
SLPSVIKSLTSESDSLGLTPGENSELALSALGGCVFYLKKCLIDQELLSLANFEEYVPVD
IDAAKTVSSRSFFVKTDQRMVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRL
LKQWLCAPLCNPKSINDRLDAVEDLLAVPHKMSEVNEHLKKLPDLERLLSKIHSIGSPLK
SQNHPDSRAIFYEEIKYSKKKIADFLSALEGFKVMNEIVDVMEEIASDFKSKVLKQLVTR
KAKNLDGRFPDLSAELKRWDTAFDHNQARKTGVITPKAGFDPDYDKALQDIKAVEEDLHK
YLDKQRKLLGFKSVLYWGAGKNRYQMEIPESVISRNLPEEYELKSSRKGYKRYWTKEIEK
MLAAMVNAEERRDAALKDCMRRLFYNFDQNSKDWQTAVECIAVLDVLMSLANYSQDGDGP
LCRPVILLPVDSAPPFLELKNSRHPCITKTFFGDDFIPNDIVIGSKDEDSGSEASCVLVT
GPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVE
LSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKELAERIRCRTLFSTHYHSLV
EDYSHNGAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKSYGFNAARLADIPEEVI
QKGHRKAKEFEKTTISLRLFRYLCQVVDGAASDANAIKKLTAMINHL
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgccagagcaccctgcaccgcttcttcaccaaggcctccccgccaccgccacgg
gcggcggcagcggcacccgccccgccgcaggccggcgcggggacccgccgccgcgcttcg
ggggagcagaacggccgcgacgccgccaccagcccccccggcccggcgagcaacggcaca
tcgagcggcggcgcgccgggcagagccgcggcccggcgcacggaggcggcggcggagggc
gggcgggccggcgcggccggccaggcccgcagtgtctcctgtgagtattcacctggtgac
ctggtctgggccaagatggaaggttatccttggtggccatgtctcatttacaaccatccg
actgaaagaacaatcatcagaggaaaagggaaatccactcgtgtccacgtacagtttttt
gatgacagccctaccaggggctgggtcagtattaaatatctgaggccatataaaggttca
tcagatggggagacgctgaagggaggtatgttttatagcacaaagcctgaaatcaaaaaa
gccatggtactagcagatgatgcaatgagtaaagataagactaagcggcttgaactggca
gtatgcaatgaaccatcagacactgaggaggaggaggaagaagtggagcagatgagtgaa
agtgcatcaggcaacagcgatgactgcaatagcgaagaggacgtgaagagcaataagcga
gtcatgaacagggaaagtgccataaaagccaaaagaaggagagtgttggattccgacagt
gatcacgatggctctgacgtggagttcaagcctgatgtgaaagaagcagcaagcagtgag
gaagctagtagtggggtggatgaaaatgaatctactgacacagagacagatgaagagagt
gttgcagaaagtcccgtgaaagtcccttctaaacgaaagagaagagagatgaacaagcct
gctaaaaggagtagcttagaaaacgaacgttctgaaacgctcaacagagcagcaccagtt
tctttagaagccaagtctaagctgacatcatttgcagcgcctgaaagttttgaatctcaa
gcaaatgcttgcagtgggggcagcagtggctttgccgtgtgggaacacgaaaagctcgag
tggctgcaggaagggaaaaagaaggatgcgcacaggagacggcagaatgaccccgcttat
gacccatgtactctgtatgttcctgaggattatctcaacaagtgtacaccaggaatgcgc
aggtggtggcagctgaaaagccaaaacttcgatgctgtgatttgctacaaagttggaaag
ttctatgagttgtatcatatggatgcagtcattggcgtaaatgagttgggcctgatcttc
atgaaaggtacttgggctcattcaggttttccagaaactgcgtttggcaggttctctgat
gttctagtgcagaaaggctacaaggtagcccgtgttgagcaaacggaaactcccgaaatg
atggaagcgcgctgcaagtcaatggcccacccgacaaaatttgacaaggttgtacgccga
gaaatatgcagaatcatcaccaaaggaactcagacttacagcattctggactgtgatccc
tctgagaaccatagcaaataccttctgtgcattaaggaaaaagaagagtcctctggacag
cgtgtttatggggtctgctttgttgacacgtcagtggggaagtttcatgtcggccagttc
tcagatgaccggcactgctcgaggtttaggacgttagtagcacattacactcctgtgcag
gtgctgtatgagaaggggaacctgtctgtggacacacagaagatactgaagggctcgctt
gtttcctgctttcaggaagggctgatctctggttcccagttctggaatgcatctaaaaca
ctaaaggtccttcttgaagaagaatatttcaaggagaaacagaactctgaaaatggatgt
tctctgccctctgtcatcaaatctctgacttcggagagtgactcgctgggattaactcct
ggtgaaaacagtgaattagctttgtcggctcttggcggatgtgtcttctatctcaaaaaa
tgtctgatcgatcaggagctgttatcgctggcaaacttcgaggagtatgtccccgtggat
atcgatgctgcaaaaaccgtaagttcacgtagtttctttgtcaaaactgaccagcggatg
gtgctggatggagtcaccctgatgaacttggaagtcctgcagaacgggaccaacggaacc
acagaaggtactttattggaaaggatcgactcgtgttgtacgccatttgggaagcgactg
ctgaaacagtggctctgcgctccgctttgtaaccctaaatccatcaacgatcgtttagat
gctgttgaggaccttctggcagtgccacataaaatgtctgaagttaatgagcacctgaag
aaacttcctgaccttgaaaggctgctcagcaaaattcatagtattggatcgccacttaaa
agtcagaaccatcctgacagcagggccatcttttacgaagaaatcaaatacagcaaaaaa
aaaattgctgactttttgtctgcactggaggggtttaaagtaatgaatgaaattgtcgat
gtcatggaagaaattgccagtgacttcaaatctaaagtcctcaagcagctggtcacccgc
aaagccaaaaacctggatggccgcttcccagatttgagtgcagagcttaaaagatgggat
actgcttttgatcataaccaggctcgaaagacaggagtgattactccaaaggcaggtttt
gaccctgattatgataaagcactacaggatattaaagctgttgaggaagatcttcacaag
tacctggataagcagcgcaaactgcttggattcaaatccgtgctgtactggggggcaggc
aaaaacagataccaaatggaaataccggaaagcgtaatatcacgtaatctgcctgaggaa
tacgagttgaagtcaagcaggaagggatataaacgttactggaccaaggagatcgagaag
atgctggctgcaatggtgaacgctgaggagcgcagagacgcagcgctgaaagactgtatg
aggcgcttgttttacaactttgaccaaaacagcaaagactggcagacagctgtggaatgc
attgctgtgttagatgtcttgatgtcccttgctaactacagtcaagatggtgatggacca
ctgtgccgacctgtaattctactgcccgtggatagtgctcctcccttcctggaacttaaa
aattcacgccatccgtgcattacaaaaactttctttggggacgattttattcctaatgac
atcgtgataggcagcaaagatgaagacagcggtagtgaagcttcctgtgtgctagtaact
ggcccgaatatgggtggcaaatctacactcatgagacaggctggtctactggttataatg
gctcaactgggatgctacgtacctgctgaagtctgcaggcttacaccgattgacagagta
tttaccaggcttggcgcctcagacagaattatgtcaggtgaaagtaccttctttgttgag
ttgagtgagacatccagcattctccagcatgcaacagagcactcccttgttcttgtggat
gaactgggcagaggcacagctacttttgatggaacggctatagcgagtgcagttgtgaaa
gaactcgcggagcgaatccggtgccggactctgttctccacacactaccactcactggtg
gaggattattcgcacaacggggccgtgcggctgggacacatggcctgtatggttgaaaac
gagagtgaagatcccagccaggaaacaattacgttcctgtataagtttattgaaggagca
tgtccaaagagctatggcttcaatgcagcaaggcttgctgatattccagaggaggttatt
cagaaggggcacagaaaagcaaaagagttcgaaaaaacgaccatttcactgagactattt
aggtatctgtgccaggtggtggatggtgcagcaagcgatgcaaatgctattaagaaactc
actgctatgatcaaccatctttaa
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