Caloenas nicobarica (Nicobar pigeon): 135986687
Help
Entry
135986687 CDS
T11056
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03008
Ribosome biogenesis in eukaryotes
cnic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
135986687 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
135986687 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnic03021
]
135986687 (XRN2)
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135986687 (XRN2)
03009 Ribosome biogenesis [BR:
cnic03009
]
135986687 (XRN2)
03016 Transfer RNA biogenesis [BR:
cnic03016
]
135986687 (XRN2)
Transcription machinery [BR:
cnic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135986687 (XRN2)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
135986687 (XRN2)
Ribosome biogenesis [BR:
cnic03009
]
Eukaryotic type
Pre-60S particles
RNases
135986687 (XRN2)
Transfer RNA biogenesis [BR:
cnic03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
135986687 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
135986687
NCBI-ProteinID:
XP_065487039
LinkDB
All DBs
Position
3:complement(121668383..121706840)
Genome browser
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVSCVEEKAKECNGVKVPIDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADSLPVAEQE
FIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKE
KRKRMKRDQPSFIPGGQFSPQALGNRSSPQAISNPRQAAFEMRMHDRQNATPSSSPNTSL
ASDGSPSLAGGIKRKAEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMG
VFPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEESRRNSLGGDVLFVGKHHPLCDFIVEQYKTKNTEPVDIPPELCHGIQG
KLTLNENAVLPDQTVESPVPMLRDLTQNSAVSISFKDPQFDEEFVFKANVLPGAKKPAPV
LKPGDWEKTNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGHMMPRERGMPGMYANAVPLG
TYGSPYARPLLGGQQQIPKLLSNLRPQESWRGPTPLFQQTPQRTAGAAPLLAWNRMLQAQ
SQYQPGQYQALGGPMGYPQRPEDRMDRGRQGYGPGRPYPLPPPSGRYSWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgccggccttcttccgctggctcagccgcaagtacccctccatcatcgtcagc
tgcgtggaggagaaggctaaagagtgcaatggtgtcaaggttccaatcgataccagcaaa
cctaaccctaacgaggtggagttcgataacctctatctggacatgaatggcatcattcac
ccttgtacgcatccagaggacaagccagcacccaaaaatgaagatgaaatgatggttgcg
atttttgagtatatcgacaggatcttcaacattgtaagaccacggcgacttctttacatg
gctatcgatggagtagctccacgtgcaaaaatgaatcaacagcggtccaggagattcaga
gcatcaaaggagggcatggaagctgctgaagagaagcaaaaaatccgacaagaaatcctg
gcaaaaggtggcattcttcctccagaagaagtgaaagagagatttgacagcaactgtatt
acgccaggaactgagtttatggacaatcttgctaaatgtctccgctattacattgctgac
cgcttgaacagtgaccctgggtggaaaaatttgacagttattttgtctgatgctagtgct
cctggtgaaggcgaacataaaatcatggattacattaggagacaaagagctcaaccaaac
catgacccaaacactcatcactgcctgtgtggggctgacgctgatctgattatgcttgga
ttagccacacatgaaccaaacttcactataattagggaagagtttaaaccaaataagccc
aagccatgtgctctttgtaaccagatgggtcatgaggtcaaggattgccaaggtttgccc
agagaaaaacaaggcaagcacgaccagtttgcagacagccttcctgtcgcggaacaagag
tttatcttcatccgactctgtgttttgcgagaatatttggaaagagagctcactatggcc
agtctgcctttcacttttgattttgaaagaagtgttgacgactgggtcttcatgtgcttc
tttgtgggaaatgactttctccctcatctgccctccttggagatcagggagggagcaatt
gatcgcttggttaacatatataaaaatgtggtgcacaaaactgggggctacctcacagaa
agtggttttgtcaacctccagcgggtccagatgatcatgttagctgtaggagaagttgaa
gacagcattttcaaaaagagaaaagatgatgatgataattttaaaagacggcaaaaagaa
aaaagaaaaagaatgaagagggatcagccttctttcattcccggtggacagttttcccct
caagcactgggcaatcgatccagtcctcaggcaatcagcaaccctagacaggccgccttt
gagatgagaatgcacgacagacagaatgctacaccttcgtcatctccaaataccagcctc
gcttctgatggcagcccgtccttagcgggaggaattaagcgaaaagctgaagacagtgac
agtgaacctgagccagaggataatatcaggttatgggaaactggttggaaacagcgctac
tacaaaaacaaatttgatgttgatgcatctgatgagaaattccgtcgtaaagttgtacag
tcctatgtggaagggctttgctgggttctcagatattattatcagggctgcgcatcctgg
aactggtattacccttttcactatgctcccttcgcttctgactttgaggggattgcagac
atgccgtccgattttgagaaaggctcaaaaccgttcaagcctcttgaacaactgatggga
gtgtttccagctgccagtggaaattttctgccgcccacgtggaggaagctcatgacagac
ccggaatcaagcataattgacttctaccctgaagattttgctattgatttaaatgggaag
aaatatgcttggcaaggtgttgcgttactgccgttcgttgatgagcgtcgcctcagagct
gcgctggaagaagtctaccctgacctcactcccgaagaaagcaggagaaacagccttggt
ggtgatgttctctttgttggaaagcaccacccgctttgtgactttattgtagaacagtac
aagaccaaaaatacagagccagtggacataccccccgagctgtgccatggaatccagggc
aagctgacgctgaatgaaaacgctgttcttccagaccagacagtggagtctcctgttccg
atgctgcgtgatcttacacaaaattctgcagtcagtatctctttcaaagatccacaattt
gatgaagaattcgttttcaaggctaacgtgttacctggcgcgaagaaacctgctccagtt
ctgaagccaggagactgggaaaaaaccaacaacgatggcaggccttggagaccacagctt
ggctttaaccgagacagaaaacccgtccatttggaccagtcagcatttagaactttaggc
cacatgatgccaagggaacgagggatgccagggatgtacgccaacgccgtgcctctcgga
acctacgggagcccatacgcccggccgctgctgggcgggcagcagcagattcctaagctg
ttgtcaaatctgcggccgcaggagtcctggcgaggccccacgcccctgttccagcagacc
ccgcagagaacggccggggccgcccctctcctggcctggaaccgcatgctgcaagcgcag
agccagtaccagcccggccagtaccaggcgctgggcgggcccatgggctacccgcagcga
cccgaggatcgcatggaccggggaaggcagggatatggccccgggaggccctacccgcta
ccacctccttcaggaagatacagctggaattag
DBGET
integrated database retrieval system
