Caloenas nicobarica (Nicobar pigeon): 135986721
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Entry
135986721 CDS
T11056
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135986721 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnic03021
]
135986721 (CPSF3)
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135986721 (CPSF3)
Transcription machinery [BR:
cnic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135986721 (CPSF3)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
135986721 (CPSF3)
U7-dependent histone pre-mRNA processing factors
135986721 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
135986721
NCBI-ProteinID:
XP_065487133
LinkDB
All DBs
Position
3:complement(16858628..16879265)
Genome browser
AA seq
691 aa
AA seq
DB search
MSVKRKAEALIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYKWLLSDCVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRG
GRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMSVYQTYVNAMNDKI
RKQININNPFVFKHISNLKSMDHFDDIGPSIVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHVMSEPEEITTMSGQKLPMKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KPEQGQRISGILVKRNFNYHILSPCDLSNYTDLAMSTVTQTQAIPYTGPFNLLYYQLQKL
TGDVEEIEIQQKPALKVFKNITVIQEPGMVVLEWVANPANDMYADTVTTVILEVQSNPKI
QKAAVHKISKKVDMDVYRKRMEIMLQDMFGEDCVSSKDGSVLSVTVDGKTANVSLDTRTV
DCEPGSEDDESLREMVELAAQRLYDALSPVC
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgaagcggaaagccgaggccctgatcccggccgaggagagcgaccagctgctc
atccggcccctcggtgctggccaagaagtaggaaggtcatgcattattctggagtttaaa
ggaagaaaaataatgcttgattgtggaatccatcctggactggaaggaatggatgctctt
ccttacattgatttgatagatcctgctgagattgatctcctcctaattagtcatttccat
ttagatcactgtggggctttaccgtggtttttgcagaaaacaagttttaagggaaggaca
tttatgactcacgccacaaaagctatttacaaatggcttctttcagactgtgtcaaagtc
agtaatatatcagcggatgacatgctatacacagagacagacctcgaagaaagcatggac
aagattgagaccatcaacttccatgaagtgaaagaggtggcaggaatcaaattctggtgt
taccacgcgggccacgttctgggagcagccatgtttatgattgaaatagctggtgtgaag
cttttatatacaggtgatttctcaagacaggaagacagacatctgatggcagctgagatt
cccaatattaaacctgatattcttataattgaatccacgtatggtactcatattcatgaa
aaaagggaagagcgagaggcaagattctgtaataccgttcatgacatcgtaaatagagga
ggtagaggtcttattcctgtgtttgccctgggtcgagcgcaagagctacttttaatttta
gatgaatactggcagaatcatcctgaactccatgatatccctatatattatgcctcctct
ttggcaaagaaatgtatgtctgtttatcagacgtatgtcaatgccatgaatgacaaaatc
cgcaagcaaattaacatcaacaatccatttgttttcaagcatattagtaatctgaagagt
atggatcattttgatgatatcggccccagtattgtgatggcttccccaggtatgatgcag
agtggcttgtccagagagttgtttgagagctggtgcacagataagagaaacggagtcatt
atagcagggtactgcgtggaaggaacgcttgctaagcacgttatgtctgaacctgaagag
atcacaactatgtcaggccaaaagctcccaatgaagatgtctgtggattacatttctttc
tccgctcacacagattatcaacaaactagtgaatttatccgggccctgaaacctccacat
gtgattttagttcatggtgagcagaatgaaatggccagattgaaggcagcgctgatacgg
gaatatgaggataatgacgaagttcatatagaagttcataatcctaggaatactgaagct
gtgacattaaacttcagaggagaaaaacttgccaaggtgatgggatctttagcagataag
aaaccagagcaaggacagagaatttctggaatcctagttaaaagaaattttaactatcat
atcctttctccatgtgacctctccaattatacagacttggcgatgagcactgtaacacag
acacaagccattccatataccggcccttttaatctgctttactatcagctacagaaactt
acgggtgatgtagaagaaatagaaatccaacaaaaaccagccttgaaggttttcaaaaat
atcactgtgatccaggaaccaggcatggtggtccttgagtgggtggccaatcctgctaat
gatatgtatgcagacaccgtgacaacagtgatactggaagttcagtcaaatcccaaaata
cagaaagccgcagtacataaaatttccaaaaaagtagatatggatgtgtataggaagaga
atggagatcatgcttcaggacatgtttggagaagactgtgtgagttcaaaagacggctcc
gtcctgagcgtcacggtggatgggaagacggcaaacgtttccctggacacgcggacagtt
gactgtgagccaggaagcgaagatgacgaatcccttcgtgaaatggtagaactggctgcg
cagaggctttatgatgccctcagcccagtgtgctga
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