Caloenas nicobarica (Nicobar pigeon): 135986835
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Entry
135986835 CDS
T11056
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
135986835 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnic03400
]
135986835 (MSH2)
DNA repair and recombination proteins [BR:
cnic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
135986835 (MSH2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
135986835
NCBI-ProteinID:
XP_065487379
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Position
3:105438366..105495331
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AA seq
936 aa
AA seq
DB search
MAVEPPRDAVWPEGAGAEAGFVRAVLSLPDKPDTTVRFFERGDYYTAHGADARLAARELF
RTRAVIRQLAGAPGTQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSIKENDW
YLAYKGSPGNLAQFEEVLFANNDMSSAIGVVGVKLSTTDGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQVIQRGGILITDRKKADFTTKDI
VQDLNRLLKSKKEEQINSAALPEMEKQVAVSSLSAIIKFLELLSDESNFGQFELTTFDLS
QYMVLDNAAVQALNLFQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIE
ERLNLVEAFVVDPELRQCLQEDLLRRFPDLNRLAKKFQRQAATLQDCYRMYQAINQLPNV
IQALEKHEGAHQMLLLAVFITPLNDIFSDFSKFLEMIETTLDMDKVENHEFLVKASFDPN
LTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHHFRITCKEEKVLRNNS
KYVIVDTQKNGVKFTNSKLSSVNDEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMND
VIAQLDAIVSFAHVSNGAPVPYVRPVILDKGQGRIVLKGARHPCVEVQDEVAFIPNDVTF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVTIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAF
CMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNIGKSNESDGEPPAKKFYREREEGEKIIQEFLCQVKALPLTD
MSEEDIKMKLKELRNDVLAKNNSFVNEIISRTKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccgcgggacgcggtgtggccggagggcgcgggggccgaggcggga
ttcgtgcgcgccgtgctctcgctgcccgacaagcccgacaccaccgtgcgcttcttcgag
cgcggcgactactacacggcgcacggggcggacgcgcggctggccgcccgcgagctcttc
cgcacccgcgccgtcatccgacagctggcgggggcgccgggaactcagaaacttgagagt
gttgtgcttagtaaaatgaactttgaatctttcgtgagagatctgcttctggttcgtcat
tacagagttgaagtttacaagaacaaagcagggagtaaatctatcaaagaaaatgactgg
tatttagcatacaagggttctccaggaaatctcgcccagtttgaggaagttctctttgcc
aacaatgatatgtcatcggccattggggttgtgggggttaagctgtctactactgatgga
caaagagttgtaggagtggggtatgttgacactacgctgagaaaactgagcgtctgtgag
tttccagataatgatcagttctcaaaccttgaagctctgctggttcaactaggaccgaag
gagtgtgtactaccaggaggagagactgcaggagagatgggaaaactacgacaagtcatt
cagcgaggaggaatcctaattacagacaggaagaaggcggatttcacaacaaaagatatt
gttcaggatctcaatcgcttgttgaaatcaaaaaaagaagaacaaatcaatagcgcagca
ttgccagagatggaaaaacaggttgctgtttcatctttgtcagccattatcaagttttta
gagttgctgtcagatgagtctaattttggacaatttgaactgactacttttgatcttagt
caatacatggttctagataacgcagctgttcaagccctcaaccttttccagagttctgtg
gaaaatgctaacactgcacagtctctagctggtttactaaataaatgcagaacccctcaa
ggacaaagactagttaatcagtggatcaaacaaccacttatggacaaaaatagaattgaa
gaaaggttgaatttggttgaagcttttgtggtggatccagaactacgtcaatgccttcaa
gaagacctcttgcgtcgcttcccagatcttaaccgcctggcaaagaaatttcagagacaa
gcagcaaccttacaggactgctaccgaatgtatcaagctattaatcagctgcctaatgtt
atacaagcactagaaaaacatgaaggagctcaccagatgttgttgttggcagtatttata
acacctcttaatgatatcttctctgacttctcaaagtttctggagatgatagaaacaaca
ttggacatggataaggtggagaatcatgaatttcttgtcaaggcttcttttgatcctaac
ttgacagaattaagagagaaaatgaatgaactggaagaaaaaatgcagtcctttttaaag
agtgcagccaaagaactaggtttggaagctggcaagagtatcaaactggagacaaattca
cagtttggacaccacttccgaataacctgcaaggaggaaaaagttctccgtaacaattca
aaatacgtaatagttgatacacagaagaacggtgttaaatttactaacagcaaactgagc
tccgtcaatgacgaatacataaagaacagagaagagtatgaagaggctcaggatgcaatt
gttaaggaaatcattaacattgcttcaggttatgcagaaccaatacagacaatgaatgat
gtgatagctcagttagatgcaattgtcagttttgctcacgtgtcaaatggagcaccagtg
ccgtatgtccgtcctgtcattctggacaaaggacagggaaggattgtgctgaaaggtgcc
agacatccttgcgtcgaagtgcaagatgaggtggccttcatccccaatgacgttacattt
gagaagggcaagcagatgttccacattattactggccctaacatggggggaaaatcaaca
tacatccgacagacaggtgtgattgttcttatggcccaaattgggtgttttgtgccatgc
gagtctgcagaagtcaccatcgtggattgtatcctggctcgtgttggggctggagacagt
cagctgaaaggtgtctctactttcatggctgaaatgttagaaacggcttcaatccttagg
acagcatctgaaaactccctgataatcattgatgagctgggaagaggaacttctacctat
gatggctttggcttagcatgggctatttcagaatacattgctagcaaaatctgtgctttc
tgtatgtttgctacacatttccatgaactgacagctcttgctgaccaagtgccaaccgta
aataacctacatgttactgctctgaccagtgatgacacactgacgatgctttatcgtgtc
aaggaaggtgtttgtgaccagagttttggaatacacgtagcagagttggcggctttccca
aaacatgtgatagaaagtgcgagagagaaagcactggagctggaggaatttcaaaacatt
ggcaagtccaacgaatctgatggagaaccaccagccaagaaattctacagagaaagagag
gaaggagaaaagataattcaggaatttctttgtcaagtgaaagcattgcctctgacagat
atgtcagaagaagacatcaaaatgaagctgaaagagttgagaaacgatgtgttggcaaag
aacaacagttttgtgaatgaaataatctcccgaacgaaagttacatcgtga
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