Caloenas nicobarica (Nicobar pigeon): 135986882
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Entry
135986882 CDS
T11056
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnic03021
]
135986882 (SCAF8)
03041 Spliceosome [BR:
cnic03041
]
135986882 (SCAF8)
Transcription machinery [BR:
cnic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135986882 (SCAF8)
Spliceosome [BR:
cnic03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
135986882 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
135986882
NCBI-ProteinID:
XP_065487463
LinkDB
All DBs
Position
3:complement(66097694..66276398)
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AA seq
1358 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQDKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVVQSLPDPWV
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEQNEEPKKETPTSQLPLVPESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVE
TNVDDSMDIQQQDMDIDEGQDVAEEETFEQEEKKSAVRSRSRTHSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNSEW
ETARSSEAAKENVQTTQSPAADKNTVVTTQAEAYTQPVTMLQIPVAPVVPAVSLVPPAFP
VTMSVPPPGYSAIPPPPFLRASFNPSQPPPGFMPPPVPPVVPPPVVPPPVVPPVVPTPLV
QPPLPIAQETMKDVPFSSLVLPVGTVASSLATPTLSAGSVFNPLPISKPESDEKGSHLTD
LQISSSENSRSVQSDISSSSGPVGGVPPPSVSSSSGLTGEGQPLNVPSSSGLAGGVQPPN
VSSSSGLVGGVQPPTVSSSSGLAGGVQLPTVSSSSSLAGGVQPTNVSSSSGLMAGVQPPP
NVSSSSGLLAGVHPPSVSSSPGLLTGMQPPNVSSSSGVLAGLQPPSVSSNSGLLIMPPPN
VSSSSGLMGVPPPNISNSSGLLAMQHPAGVQNMPHLNISSQRMPGMPLIDIRPGLMPHSP
GPRFPLMQPGMPPQRSIPPPAILDPALHPPPRGPFPSADIFNQPERPFGTPGRQNIDGIS
NPEKRLPLGGDNIQQEGDRDYRFPPVENRDNLSRPSPVDVRDSVGRPPVDPREGIGRPPV
DGRDHFARPHVDMRENFGRPGIDNLGRRDHFGFNSDKHWGQRGDYDEREHHAFPIYGGPK
GFHEDRERFRHVNYRFDSRSGPNWNRGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCREI
NGNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKADNMPQVNGENTETESQPPTAQVQDD
PELYEKLTSSVEINKEKSDTEADIESAPVVESTETEGT
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaaagcctttaacagcgagttgtactcgctaaatgactataaaccaccc
atttctaaagctaaaatgacacagatcaccaaggcagcaatcaaagctataaagttctac
aagcatgttgtacagagtgttgagaagttcattcaaaagtgcaagccagaatacaaagta
cctggtctgtatgtcattgactccattgtgagacagtcccggcatcagtttggacaagat
aaggacgtatttgctccaagattcagcaataacatcatcagcactttccagaacttgtac
cgttgtcctggggatgacaagagtaaaattgttagagtgctgaacttatggcagaagaat
aatgtgttcaagagtgaaattattcagcctctcttggatatggcagcgggaattcctcct
ccagttgtgacccctgtcttgcccagcactacagctgctatgagcaacaatacaccagga
acgcctgtgactccagttactccagccaatgtcgtgcagagtttacctgatccttgggta
tctcagattgctaatacagatacgcttgctgctgttgcacagattttacagagtcctcaa
ggccaacagcttcagcagttgatacagacactgcagatacagcagcagaaacctcagcca
tcactacttcaagccctggatgctggtcttgtagttcagttacaggccctcacagcacaa
cttacagctgctgctgctgctgctaacacactcaatccactggaacagagtgtctccttt
aataagaagctgatggacagatttgactttggggaagaatccgaacaaaatgaagagcct
aaaaaggaaactcctacttcccaactgcctttagtaccggaatctgtgaacaactcactt
ttccaccaactagctgaacagctacagcagcaaaatttagaacatctccgacaacagctt
ctggagcaacagcagcctcaaaaggcaagccctgaggagaatcaagaaggaaattttggt
tcagagcactctgcatcaccatcacaagggagtagtcaacagcagtttttagaagtggag
acaaatgtagatgattcaatggacattcaacaacaggacatggatatagatgaaggacag
gatgttgctgaagaggagacttttgaacaagaagaaaagaaatcagctgttcgttcaaga
tcaagaactcattcaagatctcgttcaaggtcaccaagaaaacgaaggtctagatcacgg
tctggttctcgtaagcgtaaacacagaaaacgttcacgctcaagatcaagagaaagaaag
agaaagtcgtctcggtcatattccagtgaaagaagggctagggaaagggaaaaggaacgt
cagaaaaagggattgcctcctatccggtcaaaaacactaagcgtttgcagtactactctt
tgggtaggtcaagtagacaagaaggctacacagcaagatttaactaacttgtttgaagaa
tttggacaaatagagtcaattaatatgattcccccaagaggttgtgcttatgtctgtatg
gtacataggcaagatgcgtatcgtgctcttcagaaacttagttctgggtcctataaaatt
ggatctaaaattattaagattgcctgggctctgaataaaggtgtgaaaacggaatacaag
cagttctgggatgtagatctgggagtttcatatattccttgggagaaagtaaaattggat
gatttagagggctttgctgaaggtggcatgattgaccaggaaacagtaaattcagaatgg
gaaacagccagaagctcagaagctgctaaagaaaatgttcaaaccacgcagagtcctgca
gctgataagaatacagtggttacaacgcaggcagaagcttatacacaaccagtcactatg
ctgcagattccagtagctccagttgtgcctgctgttagcttggttccacctgcatttcct
gtcacaatgtctgtccctcctcctggttatagcgcaattcctcctccacccttcttgcga
gcgagtttcaacccttcacagccacctccaggttttatgcctccgccagttccgcctgtg
gtccccccacctgttgtccccccacctgttgtcccaccagttgttccaacacctttagta
cagcctccactaccgattgcacaagaaacgatgaaggatgttccttttagtagccttgtt
ctgccagttggcacagttgctagcagtctagctactccaacattatctgctggaagtgtt
tttaatcctctacccatcagcaaaccagaatcagatgaaaagggatcacatcttacagac
cttcagatttcttccagtgagaacagtagatctgtgcagagtgacatctcgagtagctct
ggacctgttggaggagtgccaccacccagcgtctcaagcagttctgggcttactggagaa
gggcaaccactcaatgtcccaagtagctctggacttgcaggaggagtacagccacccaat
gtttcaagcagctccggacttgtcggaggagtgcagccaccaacagtttcaagcagttct
ggtcttgcaggaggggtgcagctacccactgtctccagtagctcttctcttgctggtgga
gttcagccaaccaacgtctcaagtagctctggacttatggctggagtgcaaccgccacca
aatgtctcaagtagctcagggcttctagctggagtacatcctcccagtgtctcaagcagt
cctggccttctgacaggaatgcagccacccaatgtctcaagcagctcaggagttctggca
ggactgcagccacccagtgtctcaagcaactctgggcttctcataatgccaccacccaat
gtttcaagtagttccggacttatgggagtgccaccaccaaatatttcaaatagttctgga
ctcctggcaatgcagcatcctgctggggttcaaaacatgcctcatctaaatattagtagt
caaaggatgccaggaatgcctctcatagacatccgtccaggcctaatgccccattcgcct
ggaccgaggtttccgttaatgcagccaggaatgccaccgcagcgtagtattcctcctcca
gcaatccttgatccagctcttcacccaccacctcgaggtccttttccttcagcagatatt
tttaatcaaccagaaagaccttttggaacaccaggaagacaaaatattgatggcatttct
aatccagagaaaagactgccacttggaggcgataacattcagcaggaaggagacagagat
tatcgctttcctccagtggaaaaccgagataatcttagcaggccatctccagtggatgtc
agagattctgttggacgaccaccagttgatccaagagagggtataggaaggcctccagta
gatggaagagaccactttgcaagaccacatgtagacatgagagaaaattttggaagacca
ggtatagataacctcggtcgaagagaccattttggtttcaattcagacaagcactgggga
cagagaggagattatgatgaaagagagcaccatgccttccctatttatggtggacctaaa
ggcttccatgaagacagggagaggtttcggcatgtaaactataggtttgatagtagaagt
ggtcccaattggaacagaggatttgaacaagatgctcacagagattttgatgaccgcaga
agaccctgggaaagacagagggatagggatgacagagattttaatttttgcagagaaatt
aatgggaacaggtttggaagagacagaatgtcaaacaactggatcccccctccgcatcca
cgggtttttgaatattttgatggggctacttcccaacgcaaagccgataatatgccccag
gtaaatggtgaaaatacagagacagaaagtcagccaccaactgcacaggtgcaggacgat
ccagaactgtatgaaaaactgacatcttccgtcgagataaacaaagagaagagtgacaca
gaagctgatatagaaagtgcaccagtggtagaaagcacagaaactgaggggacataa
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