Caloenas nicobarica (Nicobar pigeon): 135987189
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Entry
135987189 CDS
T11056
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135987189 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135987189 (PNLDC1)
Enzymes [BR:
cnic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
135987189 (PNLDC1)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
135987189 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
135987189
NCBI-ProteinID:
XP_065488005
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All DBs
Position
3:71501321..71513248
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AA seq
532 aa
AA seq
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MEVGAAGFERHLPLLRGRIRHAAFLAFDMEFTGLHSSCPENNEPSLFDSPVERYLKARQS
VQRFTVTQLGLAIFSNENSKKYVVHSYNFYLFPATLGVTDVEFTLSASSIQFLSHYGFDY
NKFLKDGIPYMNEEQEKIFSQHLSAGSWKVSSDLDRDVLKKAIDEVTCWIAAAEEDDTMV
LQDLSGYQMFEVQLVLRQALQNVWTQPLGDKKVMVKKVSLQHRRLLENSPYDCCQKELIL
LSARGFTNLFQTLVKAKKPLVGHNMLMDLMHLHDKFYKPLPESYEEFKKNIHNLFPVLID
TKTVTKSVWKKCPFPRVSNLLEVYEVLCSSNLNPTDPASPVITLASDCSRYAEKKSPHEA
GYDAFLCGSVLLKSAHLLLCRSTDDAVEADPSFSQYLTVLADYLNKVNFIRGSVSSINFS
GEDASCQHPPLLVVHVQGWPGLNERHIYQEFNAFCRFDVRRLSKNQFLLLSNKFKDIRHV
LRDYKDHPHLRVSVYHHWKHSPSVNCLLQVSGIVALWSLLAFVLGGGPCSSF
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgggggctgcgggcttcgagcggcacctgccgctcctgcggggccgcatccgc
cacgccgccttcctggcctttgacatggagtttactggcttgcattcaagttgcccagaa
aataacgagcccagcctgtttgattcccccgtggagcggtacctgaaggccaggcagagc
gttcagcgcttcacggttactcagctcgggctggcgatattctcaaatgaaaattcaaaa
aagtatgtggtgcattcatacaatttttatctctttcccgcaacattgggagttacggat
gtcgaattcaccctctctgcatctagcattcagttcctgtctcattatggctttgactat
aataagttcctcaaagatggaatcccgtacatgaatgaggaacaggagaagatctttagc
cagcatctctcagcgggtagctggaaagtcagcagtgacctagacagggatgtgctgaag
aaggctattgatgaagtgacctgttggatagctgcagcagaggaagatgatactatggtt
ctgcaggatctgagtggctatcagatgtttgaagttcagctggttctgagacaggctctc
caaaatgtttggacacagcctcttggagacaagaaggtaatggtgaaaaaagtgagtctg
cagcatcgccggcttctggagaactctccttatgactgctgccagaaagagctcattctc
ctgtctgcccggggcttcaccaacctcttccagacacttgttaaagccaagaagcccctg
gtgggacacaacatgcttatggaccttatgcatcttcacgacaagttctacaagcccctt
ccagaaagctatgaagagtttaaaaagaatattcacaatctgtttcctgtcctcatagac
accaagactgtaacaaaatccgtctggaagaaatgtccatttcctcgagtatctaatctt
ttggaggtgtatgaggttctgtgcagcagcaacctaaatccaacagatccagcatcccca
gtgatcactcttgcaagtgactgctcaagatatgctgagaagaaatctcctcatgaggca
ggctatgatgcatttctctgtggttcagttcttctgaagtcagctcatttgctactgtgc
agatccacagatgatgcagtggaggctgatccttctttctctcagtatctcaccgtgtta
gctgactatctgaacaaagtgaatttcatccgaggaagtgtttcaagcattaatttttct
ggagaagatgcttcctgccaacatccccctctcctggttgtccatgtccaaggctggcca
gggctgaatgaaaggcacatataccaagagtttaatgctttttgtcgctttgatgtcaga
cggctttcaaagaaccagttccttctgctctccaataaatttaaggacatcaggcatgtt
ctgagagattataaggatcaccctcacctgcgggtttctgtctatcaccactggaagcac
tctccgagcgtgaactgcctgctgcaagtctctggtattgtggcgctgtggtctctcttg
gcctttgtactcggaggaggtccttgctcttctttctaa
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