Caloenas nicobarica (Nicobar pigeon): 135987477
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Entry
135987477 CDS
T11056
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
135987477 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cnic04121
]
135987477 (TRIM54)
Ubiquitin system [BR:
cnic04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
135987477 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4
zf-RING_5
zf-B_box
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
TRIM_CC
Sina_RING
CYP38_PsbQ-like
Prok-RING_4
RHH_9
Zn_ribbon_FGT1_2
EarA
DUF5799
CoiA_N
Motif
Other DBs
NCBI-GeneID:
135987477
NCBI-ProteinID:
XP_065488487
LinkDB
All DBs
Position
3:complement(1048078..1051557)
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AA seq
380 aa
AA seq
DB search
MNFAVGLKPLLAEARSMESLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSSAVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESARPLHAKA
EQHLMCEEHEDERINIYCLRCEAPTCSLCKVFGAHKDCEVAPLPAVYQRQKSELSDGIAM
LVAGNDRIQAIITQMEEICHTIEDNGRRQKQHLGLRFDSLYSILEERKKELLQSIAREQE
EKVQHVRGLIRQYGDHLEASSKLVESAIQAMEEPQMAVYLQHSKELLKKIMDMSKVTMSS
RPEPGYENMDHFSINVDYVAEMLRTIEFQTEPLGEDDGDGPGDGSEAAGDEDRLDSLEAP
EAVEDVGTRQKPASSPHGQH
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgcggtggggctgaagccgctgctggcggaggcgcggagcatggagagcctg
gagaagcagctcatctgccccatctgcctggagatgttcaccaagcccgtggtcatcctg
ccctgccagcacaacctctgccgcaagtgcgccaacgacgtcttccaggcctccaacccg
ctgtggcagtcgcggggctccagcgcggtcccgtcgggcggccggttccgctgcccgtcg
tgccgccacgaggtggtgctggaccggcacggggtgtacgggctgcagcggaacctgctg
gtggagaacatcatcgacatctacaagcaggagtcggccaggcccctgcacgccaaggcc
gagcagcacctcatgtgcgaggagcacgaggacgagcggatcaacatctactgcctgcgc
tgcgaggcgcccacctgctccctctgcaaggtcttcggggcgcacaaggactgcgaagtc
gcgccgctgcccgccgtctaccagcgccagaagagcgagctcagtgatggcatcgccatg
ctggtggcggggaacgaccgcatccaggccatcatcacgcagatggaggagatctgccac
accattgaggacaacggccggcggcagaagcagcacctggggctgcgcttcgactcactg
tacagcatcctggaggagcggaaaaaggagctgctgcagagcatcgcacgggagcaggag
gagaaggtgcagcacgtgcggggcctcattcgccagtacggagaccacctggaggcctcc
tccaagctggtggagtcagccatccaggccatggaagagccccagatggcagtgtacctg
cagcactccaaggagctactgaaaaagatcatggacatgtccaaggtgacgatgagcagc
cgcccagagcctggctacgagaacatggaccacttctccatcaacgtggactatgtggcc
gagatgctgaggacgatcgagttccagacagagccgctgggcgaggatgacggggacgga
cccggggacggcagtgaggccgcgggagatgaggaccggctggacagcctggaggcaccc
gaagctgtggaagatgtggggacgaggcagaagccagcgagctccccccatggtcagcac
tga
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