Caloenas nicobarica (Nicobar pigeon): 135987493
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Entry
135987493 CDS
T11056
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cnic03041
]
135987493 (DDX1)
03016 Transfer RNA biogenesis [BR:
cnic03016
]
135987493 (DDX1)
Enzymes [BR:
cnic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135987493 (DDX1)
Spliceosome [BR:
cnic03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
135987493 (DDX1)
Transfer RNA biogenesis [BR:
cnic03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
135987493 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
135987493
NCBI-ProteinID:
XP_065488514
LinkDB
All DBs
Position
3:complement(13708180..13730256)
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQSESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDIDKGQIKFSKNGKDLGLAFEIPPHIRNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYMGLCKAPDGNVVKSQHSGSAQVVQTQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLISTGKLN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVLVNPKTDKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTISQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttttcggagatgggtgttatgcctgagatagctcaagcagtggaggagatg
gactggcttctgcctacggatatccaatcggaatctatcccgctgatcctgggaggtggt
gatgtacttatggctgctgaaacagggagtggaaaaaccggtgcttttagcattccagtt
atccagattgtttatgaaacgctgaaggaccagatggaaggcaagaaagggaaagcaacg
attaaaactggtggggcagttctcaataaatggcaaatgaacccgtatgatagaggatca
gcttttgcaattggatcagatggtttgtgttgtcaaagtagagaggtaaaagaatggcat
ggatgcagagcaactagaggcgtgactaaagggaaatactactatgaagtttcctgtcat
gaccaaggcttgtgcagagttggttggtcgactatgcaggcttcactggatttgggcact
gataagtttggctttggctttggtggcactggtaagaaatctcacaacaagcaatttgac
agctatggtgaggaattcactatgcatgatacaattgggtgttatctagacatagataaa
ggacaaataaaattttccaaaaatgggaaggaccttggccttgcatttgaaatcccacca
cacataaggaaccaggcactttttgcagcttgtgtactgaagaatgctgaattgaaattc
aattttggtgaagaagatttcaagtttccaccaaaagatggctacatgggtctttgcaag
gctcctgatggtaatgttgtaaaatcacaacactcaggaagtgcccaagtggttcaaaca
caaaaccttccaaatgctccaaaagcattgattgtagaaccatcaagagaactggcagaa
caaactttgaacaatgtgaagcagttcaaaaaatatgtcgataatcccaaattaagggaa
ctgttgattattggtggggttgctgcaagagatcagctctctgtactggaacaaggagtg
gatattgttgttggaactcctggaagactggatgacctgatctcaacaggaaagcttaat
ttatctcaagttagattcctggttctggatgaagctgatggccttctcctccaaggttat
tcagatttcataaacaggatccacagtcaaattcctcagataacttcagatggaaaaagg
cttcaggtgattgtgtgttctgcaacactacattcttttgatgtgaaaaaactgtctgaa
aagatcatgcattttcccacctgggttgatttgaaaggagaagattctgtccctgaaact
gtacaccatgtagttgtgcttgtaaatccaaaaactgacaaactctgggaaagacttggc
aagaatcatatcagaactgatgaagtacatgcaaaagacaatacacgacctggtgctaac
actccagaaatgtggtctgaagctattaaaattctaaaaggagaatacaccgttcgggca
atcaaggaacacaagatggaccaagccattattttctgcaggactaaaatagattgtgat
aatatggagcagtacttcatccaacagggtggaggccctgacaggaagggacatcagttc
tcatgtgtctgtctccatggtgacagaaaacctcaagaaagaaagcaaaacctggaaaga
tttaagaggggcgatgtccgtttcttgatctgcacagatgttgctgctagaggaattgat
attcatggtgttccatatgttatcaatgtcacactccctgatgaaaaacagaactatgtt
catcgaattgggagagtaggcagagctgagaggatgggtttggcaatctctcttgtggca
aaagagaaggaaaaggtttggtatcatgtgtgcagtagtcgtggaaaagggtgttataat
actagactgaaggaagaaggaggttgtaccatatggtacaatgagatgcagttgctgggg
gagattgaagaacacttaaactgcactatttcccaagttgaaccagatataaaagtaccg
gtagatgattttgatggtaaagttacatatgggcagaaaagagctctgggtggtggactg
tataaaggccatgtggatattctggcacctacggtacaagagttggctgcccttgaaaag
gaggctcagacgtctttcttacatcttggctatcttcctaaccagctgttcagaacattc
tga
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