Caloenas nicobarica (Nicobar pigeon): 135987497
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Entry
135987497 CDS
T11056
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135987497 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cnic03000
]
135987497 (CNOT4)
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135987497 (CNOT4)
04121 Ubiquitin system [BR:
cnic04121
]
135987497 (CNOT4)
Enzymes [BR:
cnic01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135987497 (CNOT4)
Transcription factors [BR:
cnic03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
135987497 (CNOT4)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135987497 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135987497 (CNOT4)
Ubiquitin system [BR:
cnic04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
135987497 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
DZR_2
Nup35_RRM_2
zf-CCCH_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
135987497
NCBI-ProteinID:
XP_065488526
LinkDB
All DBs
Position
1:complement(43787537..43866723)
Genome browser
AA seq
765 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGTVDKNKNKVTALQRYDTPNSNNKDAWPSLQSSSKSTNGLTMEH
RKTPPILENGTDPEHMTPDGADSDFGPIDKPSDSLSIGNGDSSQQITNSDTPSPPPGLTK
PNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSNDWPTAP
EPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIEKELSVQDQ
PSLSPTSLQNPTPHTTTAKGPGSGFLHPAAPTNANSLSSTFPVMPQRFPQFQQHRAVYNS
FSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHSTGLGGIPISDNSSSV
ESLNMKEWQDGLRALLPNININFGGLPNASSPSNANHSVPTSNTATTDSLSWDSPGSWMD
PAIITGIPASTGNSLDTLQDDNPPHWLKSLQALTEVDGPSAAPSQTHHSNPFGTQIPLHR
ASWNPYSPPSNPASFHSPPPGFQTAFRPPSKTPTDLLQSSALDRH
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagccctgatgctaaggaagaccctgtggaatgccctctttgcatggagcct
ctggaaatcgatgacatcaacttctttccttgcacctgtggctaccaaatttgtcgtttc
tgttggcatcgtatccgcactgacgagaatggactttgtcctgcttgcagaaagccatat
ccagaagatccagcagtgtacaaaccactctcccaggaagagctgcagaggataaaaaat
gaaaagaaacagaaacaaaatgagagaaaacagaagatatcagagaatcgcaaacatttg
gccagtgtacgggttgtacagaagaaccttgtcttcgtggtagggctatctcagcgccta
gcagatccagaggttttgaaacgaccagaatattttggaaagtttggtaaaatacataaa
gttgtcattaacaacagcacatcatatgcaggctcacagggtccaagtgccagtgcatat
gtaacctacatccggtcagaagatgctctcagagctatacagtgtgtcaataatgtggtg
gtagatggcaggacacttaaggcatcattaggtacaacaaaatattgcagttactttcta
aaaaatatgcagtgtccaaaaccagactgcatgtatctacatgagctgggagatgaagca
gccagtttcacaaaagaagaaatgcaggcgggtaagcaccaggaatatgaacagaaacta
ctgcaagaattatacaaactaaaccccaactttctccagttatctacgggtacagttgac
aagaacaaaaacaaagtgacagcactgcagaggtatgatacacccaacagtaataacaaa
gatgcctggccatcattacagagttcaagtaaatcaaccaacggtttaacaatggaacac
aggaaaacgcctcctatattagaaaatggtacagacccagaacacatgactccagatggt
gcagactcagatttcggccctatcgacaaaccttcagattccctcagtataggaaatggt
gacagctcccagcagataacaaatagtgacacaccttcaccaccacctggtttaacaaaa
ccaaacccagtcatacccatcagttcatctaatcacagtgcacggtctccttttgaagga
gctgtaacagaatcacagtcgctcttctctgacaactttcggcaccctaaccccatccct
agtgggcttcctccattccccagctctccacagacttcaaatgactggcccacagcacca
gaaccacagagcctcttcacatcagaaactataccagtatcctcctccacagactggcaa
gcagcttttgggtttggttcctccaaacagcaagaggacgacttagggtttgaccccttt
gacatcacccgcaaagccttagcagacctgattgagaaggaactgtcagtccaagaccaa
ccttccctctcgcccacatctcttcagaaccctaccccacacactacaactgccaaaggg
ccaggctctggattcctgcatcctgctgcacccacaaatgccaactctctcagtagcacc
tttccagtcatgccacagaggttcccacagtttcaacagcatcgagcagtttacaactcc
ttcagttttccaggccaagcagctcgctatccttggatggccttcccacgcaatagcatc
atgcacttgaaccacacagcaaatcccacctcaaatagtaatttcttggacttgaatctc
ccaccacaacatagcacaggtctgggagggatccctatatcagacaacagcagttctgta
gagagtttaaatatgaaggaatggcaggacgggctaagggcacttctaccgaacattaac
atcaactttggtggactgcccaatgcttcttccccctccaacgccaaccacagtgtacca
acgtccaacactgccaccaccgacagcctgagttgggacagccctggcagctggatggac
cctgcaatcatcacaggtatcccagcatccacaggaaacagtttagacacccttcaagat
gacaatcctccacattggctaaaatctcttcaggccctcacagaggtggacggccccagt
gcagcaccgtcacagacgcaccacagtaaccccttcggcacacagatccctctgcacaga
gccagctggaatccctactctcctccttcaaaccccgccagcttccattccccacctcca
ggctttcagacagccttcagaccccccagtaaaacccccacagatctactacagagctca
gcgctggatcgtcattag
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