Caloenas nicobarica (Nicobar pigeon): 135987597
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Entry
135987597 CDS
T11056
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135987597 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnic03021
]
135987597 (TAF5L)
03036 Chromosome and associated proteins [BR:
cnic03036
]
135987597 (TAF5L)
Transcription machinery [BR:
cnic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
135987597 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
135987597 (TAF5L)
Chromosome and associated proteins [BR:
cnic03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
135987597 (TAF5L)
STAGA complex
135987597 (TAF5L)
TFTC complex
135987597 (TAF5L)
SAGA complex
135987597 (TAF5L)
SLIK complex
135987597 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
TFIID_NTD2
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_WDR19_1st
PEP5_VPS11_N
PROPPIN
Beta-prop_IP5PC_F
eIF2A
Ge1_WD40
WD_LRWD1
Nbas_N
Mala_s_1-like
Motif
Other DBs
NCBI-GeneID:
135987597
NCBI-ProteinID:
XP_065488675
LinkDB
All DBs
Position
3:77518288..77540265
Genome browser
AA seq
589 aa
AA seq
DB search
MKRVRTEQIQMAVSCYLKRRQYVDSEGPLKQGLRLCQTAEEMAANLTVQSESGCANVVSA
APCLAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNMVQNGLKSTVDSFY
SRFHGMFLQNASQKDIIEQLQTTMTIQDILSNLKLRAFLDNKYVIRLQEDSYNYLLRYLQ
SDNNNALCKVLTLHIHLDVQPAKRTDYQLYAGGSSSRNESNGLEPSDVPASILQNEAALD
LLQDSIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPNSKLLAAGFDNSCVKLWSLRSR
KLKSEPHLVDVSRIRLACDILDEEEEEDDSAGTEMKTLRGHCGPVYSTRFLSDSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPCSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLSDVDCVKFHPNSNYVATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLALAFSPNG
KYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIR
NTYCNAPADGSSSELVGVYTGQMNNVLSVQFMACNLLLVTGIAQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcgtacgcacagaacagattcagatggcagtgtcctgttacctcaagcgccgt
cagtatgtggactctgaaggtcccctaaaacaagggctgaggctgtgtcagactgctgaa
gagatggcagctaatctcacagtccaatctgaatctggttgtgccaacgttgtgtctgca
gctccctgcctggcagagccacagcaatatgaagtacaatttggacgattacgcaatttt
ctcacagattcagattctcagcacagccatgaagtgatgcctcttctgtatcccctcttc
gtctacctccatctgaacatggtccagaatggcctaaaaagcacagtggacagtttttac
agccgcttccatggcatgttcttgcagaacgccagccagaaggatatcattgagcagttg
cagactaccatgactattcaagatatcctgtccaacttgaagctccgggcttttctggac
aacaagtatgtcatccgccttcaagaagacagctacaactaccttcttcgctacctccaa
agtgacaacaacaacgccctgtgcaaagtcctgaccttgcacattcacctggatgtacag
cccgccaagaggaccgactaccagctctacgctggtgggagctcctcacgcaacgagagc
aacggcctggaacccagtgatgtgccggcttccattctgcagaacgaggcggcactggat
ttactgcaagacagcattaaacgtgtcaaggacgggcctccttccttaacgaccatctgt
ttctatgccttctataacacggagcagttgctgaacactgcagagatttcaccaaacagc
aagttgctcgctgctgggtttgataattcgtgcgtgaagctgtggagtctgcgttccagg
aagttaaaatctgagccccacctggttgatgtgtctcgcatccgcctggcttgtgacatc
ctggatgaggaggaggaagaggatgacagcgcaggcacagaaatgaagaccctgagagga
cactgtggacctgtgtatagcacgaggttcctttcagacagttcgggactcttatcttgt
tctgaggacatgtccatcagatactgggacctcggaagttttacaaacactgtgttgtac
caaggacatgcctatcctgtctgggatttggatattagcccctgcagcctgtacttcgcc
agtggttcccatgatcgcactgcaaggctctggtcatttgatcggacgtacccgctgcgg
atatacgcaggccatttgtcggacgtagactgtgtcaagttccaccccaattccaactat
gtagcaacgggctccacggacaaaaccgtgcgcttgtggagcactcagcaaggcaactca
gtgcgtcttttcactgggcaccgtggccccgtgttagcgcttgcgttttctcccaatggt
aagtacctggcgtcagcaggtgaagaccagcggctaaagctgtgggacttggcatcagga
actctttacaaagaactgagggggcacacggacaacataaccagccttacttttagccct
gacagtagtttaattgcttcagcgtcgatggacaattcagtccgggtctgggacattcgg
aacacttactgcaatgcccctgcagatgggtcttccagtgaactggttggtgtatatacc
ggacaaatgaataatgtactgagcgtacagtttatggcctgtaatcttcttctagtgact
ggaattgcacaagaaaatcaggaacattaa
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