Caloenas nicobarica (Nicobar pigeon): 135987882
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Entry
135987882 CDS
T11056
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03030
DNA replication
cnic03410
Base excision repair
cnic03420
Nucleotide excision repair
cnic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
135987882 (RFC1)
03410 Base excision repair
135987882 (RFC1)
03420 Nucleotide excision repair
135987882 (RFC1)
03430 Mismatch repair
135987882 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cnic03032
]
135987882 (RFC1)
03400 DNA repair and recombination proteins [BR:
cnic03400
]
135987882 (RFC1)
DNA replication proteins [BR:
cnic03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
135987882 (RFC1)
DNA repair and recombination proteins [BR:
cnic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
135987882 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_14
AAA_22
Rad17
BRCT_2
AAA_5
AAA_30
RuvB_N
AAA_16
AAA_17
RNA_helicase
AAA_33
AAA_18
nSTAND3
AAA_7
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
135987882
NCBI-ProteinID:
XP_065489219
LinkDB
All DBs
Position
4:54999828..55041007
Genome browser
AA seq
1150 aa
AA seq
DB search
MDIRKFFGVVPSGKRQECGTLKKSEKVKNGEGPSSGKKKGKETKVNNSPSEDDSKQKRTN
KKRRIIYDSDSEEEVQSAKKSKKPSEKKAATSKLGKVLKRDPVVYISETDEEDDFVNKRI
SLKPKENGTSAIACPGTATVKKEDVKPRTKNKPLSPVKQTPTSALDYFGTSSVQRSVKKL
VASKRKEPSQSRDSTADDEAIARQLQLEEDSELERQLHEDEEFAKTLAMLDETPQKKKAQ
KDSGGEQSVSSIKSSPKVAEGYKQLEGVKTTNSTVEAKNYTAKQQTESDHLKGSRLSPQT
SGGKIARELTDKTLPLKPSSKLVSLKQKEITEKERAAQISVSKEKTASGKEQKTTPKKEK
ISPKKAESVSPEDSEKKRNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVL
ECIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLGTKVIDEDGLFDL
IRTMPGKKSKYELAAETEAKKAESRPKRTPQKSEAGKRNLSPFKREADNKRHKSTPEKGD
AVKSVKKEAVRKLVDFKRQTVETKEAPKPQENLVSEIKEGGTEKLLWVDKYKPVTLKAII
GQQGEQSCANKLLRWLRNWHRNVLEDGQAKTNKTGSKDDGTGFKAALLSGPPGVGKTTTA
ALVCKELGYSYVELNASDTRSKNSLKEVVAESLNNTSIKDFCSGTSSSVSGKHVLIMDEV
DGMAGNEDRGGIQELIGLIRHTKIPIICMCNDRNHPKMRSLVHYCLDLRFQRPRLEQIKG
AMMSIAFKEGLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASKAKK
DIKLGPFDVVRKVFATGEEASRMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGDLK
KHLVLLSKAADSICDGDIVDKQIRSKQNWNLLPTQAIYASVLPGELMRGYMSQFPVFPSW
LGKFSSTGKHDRIIQELAMHISLRTQTCKQTVNMEYLSYLRDALVQPLKDFGADGVQEAI
KFMDSYCLMKEDIENIMEISTWGGKPSPFSMLDPKVKAAFTRAYNKEAHLTPYSLTSVKT
SKRQSGSAVTLELNEDLNVEEIQSEEEEQDTVESDAMIKQKKVKSSKLPKREKNEETTKK
EGKRKEKTRH
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggaaattctttggtgttgtgccttctggaaagcgacaagaatgcgggacc
ttgaaaaagagtgaaaaagttaagaacggtgaagggccctcaagtgggaagaaaaaagga
aaggagactaaggtgaataattcacccagtgaagatgattccaaacaaaagcggacaaac
aagaaaaggagaataatctacgattcagattcagaagaggaggtgcagtcagcaaaaaag
tccaagaagccatctgagaaaaaagcagctacttcaaagcttggtaaagttctgaagcgg
gatcctgttgtttatatttcagagacagatgaagaagatgactttgtcaataaaagaatt
tccctgaaaccgaaagagaatgggacatcagcgattgcgtgtccaggaacagctacagtg
aaaaaagaagacgtaaaaccacgaactaaaaacaagccattatctccagtgaaacagact
cccacctcagcacttgattactttgggacaagtagtgtccaacgatcagtaaagaaactg
gtagcaagtaaaaggaaagaaccttcacaaagcagagacagcacagcagatgatgaggcc
attgctaggcagctgcagcttgaagaagattcagagctggagagacagcttcatgaagat
gaagaatttgctaaaactttggccatgttggatgaaacgccacagaagaaaaaggctcag
aaagattcaggaggagagcaatcggtatcgagcatcaagagcagtcctaaagtggcagaa
ggatataagcagttggaaggagtgaaaacaacaaactcaacggttgaagcaaagaattac
actgcaaagcagcaaacggaatctgatcatttaaaagggtctcgattatccccacagacg
tctggtggtaaaatagcaagagagttgacagataagaccttacctttgaaacctagctct
aagcttgtgtctctgaaacaaaaagagattactgaaaaggaaagagctgctcaaatttca
gtatcgaaagaaaaaactgcttcaggaaaagaacagaagacaacaccaaagaaggagaaa
atttctcccaagaaggctgagtctgtaagtcctgaggactctgagaagaagcgaaacaat
tatcaagcctaccgaagctttcttaatcgtgagggtccaaaagcactgggttccaaagag
atacctcagggagctgaaaactgcttggaaggcctgacattcgtaattactggtgttctg
gagtgtattgaaagagatgaggccaagtccctgattgaacgttacggaggaaaagtaact
ggcaatgtcagcaagaagacaaactatctggttatggggcgagactgtggccaatccaaa
tgtgagaaggcatcgactttagggacgaaagttattgatgaggatggcctgtttgatctt
attcgaactatgccaggcaaaaagtccaaatatgagctggcagctgaaacagaggcaaag
aaagcagagtcgagacctaaaaggacaccacagaaatctgaagctggaaaaaggaatttg
agccccttcaaacgcgaagctgataataaaaggcataagtctactcctgaaaaaggagat
gctgtcaaatctgttaagaaggaagctgttcgaaagcttgtggactttaaacggcaaact
gtagagacgaaagaagccccaaaacctcaggagaacttggtttctgagattaaggaaggt
ggaacagagaaattgctatgggtagataaatacaagcccgtaactctcaaggcaataatt
ggacagcagggtgagcaaagctgtgccaataaactgctccgatggctgcgaaattggcac
aggaatgtcttggaagatggacaagcaaagaccaacaaaactggaagcaaagatgatggt
actggttttaaagcagcattactttctggtccacctggagttggtaaaactactacagct
gctttggtttgtaaggaactggggtatagctatgtggagctgaatgccagtgacactcgc
agtaagaacagtctcaaggaagtagttgctgaatcgcttaacaacaccagcatcaaagac
ttctgttccggcacatcctcatcagttagcgggaaacatgtattgatcatggatgaagtg
gatggtatggcaggcaatgaagacagaggagggattcaggagttgattggtttgattaga
cacacaaagatacccatcatctgtatgtgtaatgatcgcaaccatcctaaaatgcgttcc
ttggtccactactgtttggatctccgttttcagagacctcgtctagaacagattaagggt
gctatgatgtctattgcgtttaaagaaggtttaaaaattccaccacctgctatgcaagag
ataatcctggcagcaaatcaggacatcagacaggttttacataatcttaatatgtggtgt
gcaaaagataaatcattgacttacgatgaggctaaaacagatgctagcaaagccaaaaag
gatatcaaactgggcccttttgatgttgtccggaaggtttttgctactggagaggaggct
tcccgtatgtctcttatagacaaatcggatcttttcttccatgattattcccttgcacct
ctctttgtccaagagaactatgtacatgtgaaaccagctgctgctggaggagatctgaaa
aagcacttggtgctcttgagtaaagcagctgatagtatatgtgatggtgatatagtggac
aaacagattcgtagtaagcaaaactggaatcttcttccgacacaggctatttatgcaagt
gttctccctggggagctgatgagaggatacatgtcccagtttcctgtctttcctagctgg
ctggggaaattttcatccacaggcaaacatgatcgtatcattcaagaactggcaatgcac
ataagtctcagaacccagacatgcaagcagacagtgaatatggagtatttgtcgtatttg
cgggatgcacttgtccagcccttgaaagactttggagcggatggagtacaggaagctata
aagttcatggactcctactgcctgatgaaagaagatattgaaaatatcatggaaataagc
acatggggaggcaaacccagtcctttttcaatgttggatcccaaggtcaaagcagctttt
acacgtgcctacaacaaggaggcacatctgactccatattcacttacttctgtcaagaca
tctaaaaggcagtcgggatctgcagtgaccttagaactgaatgaagacttgaatgtggaa
gagatacaatctgaagaggaagagcaagatactgttgaaagtgatgcaatgattaagcaa
aaaaaggtgaagtcttccaagctgccaaaaagagagaaaaatgaagaaacaacaaaaaaa
gaagggaaaagaaaagagaaaacaagacattaa
DBGET
integrated database retrieval system
