Caloenas nicobarica (Nicobar pigeon): 135988001
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Entry
135988001 CDS
T11056
Symbol
TBC1D1
Name
(RefSeq) TBC1 domain family member 1 isoform X1
KO
K18341
TBC1 domain family member 1
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cnic04131
]
135988001 (TBC1D1)
Membrane trafficking [BR:
cnic04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
135988001 (TBC1D1)
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
135988001 (TBC1D1)
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Rab associated proteins
135988001 (TBC1D1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RabGAP-TBC
RabGap-TBC_2
DUF3350
PID
RnlB_antitoxin
ER
DDE_Tnp_1_6
Motif
Other DBs
NCBI-GeneID:
135988001
NCBI-ProteinID:
XP_065489555
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All DBs
Position
4:complement(55423844..55532477)
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AA seq
1286 aa
AA seq
DB search
MEPITFKVKKCQTPSDFSASFSLQLVGSLPVHSLTTMSMLPWIVAEIRMLSTKSSKEEPS
VSQIRLYISPVSLRCEPDTGKIQQWDPLICSSLFEYKPQQVHKLIHNSHDPSYFACLIKD
GAAKHRSICYVFKADDQTKVNKQEQRSQCFSVPEIISSIRQAGKIARQEEFQNNLSDVED
PFAKKFEVLFCGRVTVAHKNAPPALIDECIEKFNHASCKKKSDFNSSSQQHETANNFGGF
SFSNKFRSVFQPLVSEEEEKRPIRKSFSQPGLRSFAFKKDYQEGSHRSNSFVRSFEEDAI
SLNLKSQLICGHSVVQPTDIAENRTMLFMIGQSEVYLISPDTKKVAIEKSFKEISFCSQG
IRHVDHFGFICRESSENGGFHFVCYVFQCTDEALVDEIMMTLKQAFTAAAVQQTSRAQPQ
LCEGCPMQSLHKLCEKIEGLHPSKTKLELQKHLTTLNSQEQASVFEEVKKLRPRNEQKEN
ELVISVLRNMYEEKQKDHVHVGEAKQTSQPPAENAVNEVPSSAPRFRLDMLKNKAKRSLT
ESFESILSRGSKARGPLDSAGAGDLETSMSSTVSTTSKEPPLCEKEKDRLPMLPAENAVK
PSGSVDDLPSNADDSPIEQSVLLPQQSFRRRANTLSHLPTESQESLVPVETSPSIPQRKL
MRYHSVSTETPHRRNSSGQLARSPTLARLNPSASSPNFLKYLRHNSSGEQSGHFAQKSIS
YRTALRKKLHSSSSVPNFLKFLAPVDENNTSDFRSTTSDYESKHSQQAAGADSPVRTRRH
SWRQQIFLRVATPQKACDSPSRYDDYSELGELPPRSPLEPVCEDGPFGPVKEERKRTPRE
LRELWKKAIIQQILLLRMEKENQKLQASENNLQNRRLKLDYEEITPCLKDVTLIWEKMLS
TPGRSKIKFDVEKIHSAVAQGVPRHHRGEIWKFLAEQYHLKHQFPSKQQPKDTPYKELLK
QLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGV
LLLHMSEEDAFKMLKFLMFDIGLRKQYRPDMTILQIQMYQLSRLLHDYHRDLYNHLEAHE
IGPSLYAAPWFLTMFASQFPLGFVARVFDMLFLQGSEAIFKVALSLLGSHKPLILQHENL
ETIVDFIKSTLPNLGLVQMEKTISQVFEMDIAKQLQAYEVEYHVLQDELIDSSLNDNQRL
DKLEKANSSLRKQNFDLLEELQVANGKIQNLEATVELLLTNEGKLKQSILTLEQERAALL
KAMEEMRKKIGDTDGKPLLTRHMDAD
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggagcctataacattcaaagttaaaaagtgtcaaacacctagtgatttctcggcaagt
ttcagtctccaactcgttggttctctgccagtgcattccctaaccaccatgtccatgctg
ccttggattgtggcagagatccggatgctcagtacaaagtcttccaaagaagaacctagc
gtcagccaaatccgactttatatttcgccagtgagtttgcgatgtgaaccagacactggg
aaaatccagcagtgggatcctttgatttgttcaagtttgtttgaatacaagccacagcaa
gtccacaaactgattcacaacagccacgatccaagttactttgcttgtctgataaaggat
ggagcagcaaaacaccgaagtatctgctatgtatttaaagctgatgatcagacaaaagtt
aacaagcaggaacagaggagtcagtgtttttcagtgcctgagattataagctctattcga
caagctggaaaaattgctcgtcaagaagagtttcagaataacctctcagatgttgaagac
ccttttgccaaaaagtttgaggtgctgttctgtggacgggtgacagtagcacataaaaac
gcacctccagcactcatagatgaatgcatcgagaaattcaatcatgcaagttgtaaaaaa
aaatctgatttcaactcatcatcccaacaacatgaaactgccaataacttcggaggcttc
tctttcagcaacaaatttcgatctgtcttccagcccttggtcagtgaagaggaggagaaa
aggccgattaggaaatctttttctcagcctgggcttcgttcctttgcttttaagaaggat
tatcaagagggaagccataggagtaacagctttgtcaggtcttttgaagaagatgcaatt
tcactgaacctaaaaagtcaactgatctgtggacacagtgttgtgcagccaacagacatt
gcagaaaaccggacgatgttgtttatgatcggccagtctgaagtttaccttatcagtccc
gacacaaaaaaagtagcaattgaaaaaagctttaaagaaatatccttttgttctcaggga
attagacatgtggatcactttggcttcatctgcagagagtcttcagaaaacggaggcttc
cacttcgtttgttacgtgtttcagtgtacagatgaagcactggttgatgaaatcatgatg
acgttgaaacaggctttcaccgcagctgctgtgcaacagacttccagggcacagccccag
ctctgtgaagggtgtcctatgcaaagtttgcacaaactctgtgaaaagatagaaggatta
cacccctctaagaccaaactagaactacaaaagcatctaacaacactaaatagccaggag
caggcctctgtttttgaagaggttaagaaattaagaccaagaaatgagcaaaaagagaat
gagttggttatctctgttttgagaaacatgtatgaagaaaaacagaaggatcatgttcat
gttggagaagcaaaacagacttcacagccccctgctgagaatgccgtcaatgaggtgccc
agcagtgctcccagattcagattagatatgttaaagaacaaagcaaaaagatctctgaca
gaatcatttgaaagtattttatcacgtggcagtaaagccagaggtcctctggacagtgct
ggtgctggggatttggagacctccatgtccagtactgtaagcaccacaagtaaagaacca
ccattgtgtgaaaaggaaaaagacagacttcctatgcttcctgcagaaaacgctgtcaag
cccagtggatcagtggatgatctccccagcaacgcagatgattctcctattgaacagtct
gttctgttacctcagcaaagctttcggaggcgagcaaacacactcagtcacttgccaaca
gaaagccaggaatctctggtacctgttgaaacatcgccatctattccccagaggaaactt
atgaggtatcactcagtgagcacagagactcctcacagaagaaattcttctggtcaactt
gcacgttctcctactctagctcgtcttaatccctcggcctcttcgcccaactttttaaag
tatctaaggcataattcaagtggagaacaaagcgggcattttgcacaaaagagcatctcc
taccgtactgccttaaggaaaaagcttcattcttcctcttctgtgccaaatttcttaaaa
tttctggctcctgtagatgaaaataacacctctgactttaggagcacaacaagtgactac
gaatccaagcacagccagcaggctgctggtgcagacagccctgtacggactcggcgacat
tcatggagacaacagatattcctgcgagttgcaacccctcagaaagcatgtgattctccc
agccgatatgatgattactccgaactgggagaacttccacccaggtccccattggaacca
gtgtgtgaagatggcccctttgggccagtgaaagaagaaaggaaacggacaccccgtgag
cttcgcgagttgtggaagaaagccattattcagcagatactgctcctcagaatggagaaa
gaaaaccagaagttacaagcttcagaaaacaatttgcagaacagacgtctgaaacttgac
tacgaagaaatcacaccatgcttgaaagatgtaactttgatttgggaaaagatgttgagt
acacctggaaggtcaaagattaaatttgatgtggaaaaaatacattctgctgttgcacaa
ggagtaccacgtcaccaccgtggggagatctggaagtttctagcagagcaataccatctt
aaacatcagtttccgagtaaacaacaaccaaaggacacgccttacaaagaactcctgaaa
caactaacttcccagcaacatgcgatacttattgacctagggcgcacgtttccaacacat
ccatacttctcagcacagcttggagctgggcagctgtcactctacaatattttgaaggcc
tattcccttctggaccaggaagtaggatattgccagggcctcagttttgtagcaggagtt
ttactgcttcatatgagtgaggaagatgcttttaaaatgctgaagtttctcatgtttgac
attggcctgaggaaacagtatcgtcctgatatgacaattttacagatccagatgtatcaa
ctgtctcgactgcttcatgactaccatcgagacctctataatcacctagaggcacatgag
attggccccagcctctatgctgctccctggtttctcaccatgtttgcatcccagtttccc
cttggatttgtagccagagtgtttgacatgctctttcttcaaggatcagaggccatattt
aaagtggctttaagccttttgggaagccacaagcccttgattctgcagcatgagaaccta
gaaactattgttgatttcattaaaagcactctccccaacttaggcttggtacagatggaa
aagaccattagtcaggtgtttgaaatggatattgccaagcagttgcaagcttatgaagtt
gaataccatgtgcttcaggatgagcttatagattcatctttaaatgacaatcagagattg
gataaattagaaaaggcaaacagtagcttgcgcaaacaaaactttgatctcctggaagaa
ctgcaggtggctaatggaaagatccaaaaccttgaagccacagtagagcttttattgacc
aatgaaggcaaactgaagcagtccattctcactcttgagcaggagcgagcggctttgctg
aaagcaatggaagagatgcggaaaaagattggtgatacagatgggaagcctctgcttact
aggcacatggatgctgactga
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