Caloenas nicobarica (Nicobar pigeon): 135988154
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Entry
135988154 CDS
T11056
Symbol
PCDH7
Name
(RefSeq) protocadherin-7
KO
K16498
protocadherin delta 1
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
135988154 (PCDH7)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cnic01009
]
135988154 (PCDH7)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cnic04515
]
135988154 (PCDH7)
Protein phosphatases and associated proteins [BR:
cnic01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
135988154 (PCDH7)
Cell adhesion molecules [BR:
cnic04515
]
Cadherins
Protocadherins
135988154 (PCDH7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Mid2
TMEM154
LYRIC
KIAA1549
Motif
Other DBs
NCBI-GeneID:
135988154
NCBI-ProteinID:
XP_065489946
LinkDB
All DBs
Position
4:complement(57745454..58016441)
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AA seq
1259 aa
AA seq
DB search
MRKMRTLLGFVHCCCCCCFLLLLPPPLWVSLAAAKQLLRYRLAEEGPADIRIGNVASDLG
IVTGSGEVTFSLESGSDYLKIDNMTGELSTTERRIDREKLPQCQMIFDENECFLDFEVSV
IGPSQSWVDLFEGRVIILDINDNTPTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNG
IERYELLQEPGGDGGRRAGGGGGVGSASAASESALYPGGSKRRQEADAAARSSVFELQVA
DTLDGEKQPQLIVKGALDREQRDSYELSLRVRDGGDPARSSQAILRVLITDVNDNSPRFE
KSVYEADLAENSSPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSV
LHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIRDENDNVPTIDIRKIGRIPLRDGV
ASVAEDVLVDTPIALVQVSDRDQGENGVVTCTVVGDVPFQLKPASEGEGEPQNKRKYFLH
TSAPLDYEAVRDYNVVIVAVDSGSPSLSSNNSLLVRVGDTNDNPPVFSQAVLEVSFPENN
LPGERVATVVATDADSGKNAEITYSLEASPLSSEVPGGIFSIDPDSGDVSVLAVLDREQR
DTYEFQVTARDKGVPSLQGSTTVVVRVADRNDNEPRFMQDVFTFYVKENLQPNSPVGMVT
VMDFDKGRNAELSLSIQPSDHDQAASIFSIENDTGTIFSTVSFDREQQTSYTFKVKAVDG
GEPPRSATATVSLFVMDENDNAPTVTFPSNSSYTVLPPSSNMRTVVATVVATDADTGLNA
DLNYSIVGGNPFKLFEIDPASGVVSLVGKLAPKHYGLHRLVVQVNDSGQPPQSTTALLHV
FVNESLSNATVVESQVARSLHTPLAQDIAGDPSYELSKQRLSIVIGVVAGIMTVILLILV
VVMARYCRSKGKHGYEAGKKDHEDFFTPQQHDKAKKPKKDKKGKKGKQPLYSSIVTVEAS
KPNGQRYDSVNEKLSDSPGMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKK
HQAVQDLPPANTFVGAGDNISIGSDHCSEYSCQASNKYSKQPFRRVTFSVVSQPQDPHQG
SLQSCYDSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDGSVGEAEHMENDSRPLPD
VALTGKCTRECDEYGHSDSCWMPVRTSPERKQKSQPKLSTFMPVDERGSQEKLANGEASL
MGDRNRNLLNKKLTSSYETFSAASFSKNEEGNPEDIPLTQTGEYKPSPVNTLTRREVYL
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagatgcggactctccttggctttgtgcattgctgctgctgctgctgcttcttg
ctcctcctgcctccgccgctctgggtcagcctggcagcggccaagcagctcctgaggtac
cggctggccgaggaaggacccgccgacatccgcatcggcaacgtggcttccgacctggga
atcgtgacgggctccggagaggtgacattcagcctggaatcgggctctgactatctcaag
atcgataacatgaccggggagctgagcaccacagagcggcgcatcgaccgcgagaagctg
ccgcagtgccagatgatcttcgacgagaacgagtgcttcctggacttcgaggtgtcggtc
atcggcccctcgcagagctgggtggaccttttcgagggccgggtcatcatcctggacatc
aacgacaacacccccaccttcccttcccctgtcctcacgcttaccgtggaggaaaaccgg
cctgtggggaccctctacctactccccaccgccaccgacagggacttcggccgcaatggc
atcgagcgctacgaactgctgcaggaacctggcggggacggcggccgccgcgctggcggg
ggcggcggggtgggttcggcctcggcggcttccgagagcgccctctaccccggcggcagc
aagcggcgtcaggaggcggacgcggcggcccgcagcagcgtcttcgagctgcaggtggcc
gacactctcgacggggagaagcagcctcagctgatcgtcaagggggcgctggatcgggag
cagcgggactcctacgagctcagcctccgcgtacgggacggcggcgacccggcgaggtct
tcgcaggctatcctgagagtcctgatcaccgacgtgaacgacaacagtccccgcttcgag
aagagtgtctatgaggcagacctggcagagaacagcagccccgggacccccatcctgcag
ctgcgagccgccgacctggacgtgggggtgaacgggcagattgagtacgtcttcggggcg
gccaccgagtctgtcaggcgcctgctgcggctggacgagacctccggctggctcagcgtc
ttgcaccgcatcgaccgtgaggaggtgaaccagcttcgcttcactgtcatggcccgagat
cggggccagccccccaagacagacaaggccacggtcgtgctgaacatccgtgatgagaat
gacaacgtgcctaccattgacatccggaaaatcgggcgcatcccgctccgggatggggtg
gctagtgtggctgaggatgtgctggtggataccccaattgccctagtgcaggtttcagac
cgggaccaaggtgaaaatggtgtggtgacctgcaccgtggtgggagatgtgcccttccag
ctcaaaccagccagcgagggcgaaggggagccgcagaacaagcgcaagtatttcctgcac
acctcagcccctctggactacgaggctgtacgtgactacaatgtggtgattgtggctgtg
gactcgggcagccctagcttgtccagcaacaactccttgctggtgcgggttggagacact
aacgacaaccctcccgtgttcagccaggctgtgctggaggtgtccttcccagagaacaac
ttgcctggtgagagggtggccacagttgttgccacagatgcggacagtggcaagaatgcc
gagatcacctactccctggaggcctcacccctctcctctgaggtgccgggtggcatcttc
agcattgaccctgactctggggatgtgtcggtattggcggtgctggaccgcgagcaacgt
gacacctatgaattccaggtgacggcccgggacaagggggtgccatcactgcagggctcc
accactgtggtggtgcgggtggcggatcgcaatgacaatgagccacgcttcatgcaggac
gtgttcactttctatgtgaaggagaacctgcagcccaacagtcctgtgggcatggtgact
gtgatggacttcgacaagggccgcaacgcagagctcagcctctccatccaacccagcgac
catgaccaggcagccagcatcttctccattgagaatgacactggaaccattttctccact
gtctcttttgaccgggagcagcagaccagttacacttttaaagtgaaggcagtggatgga
ggtgagccgccacgctctgctaccgccactgtgtccctcttcgtgatggatgagaatgac
aatgcgcctacggtcaccttccccagcaacagctcctacacagtgctgccgccctccagc
aacatgcgaaccgtggtggccacagtggtcgccaccgatgcggacactggtctcaatgct
gacctcaactacagcatagtcgggggcaatcccttcaaactctttgagattgacccagcc
agcggcgtggtgtcgctagtgggcaagctggcccccaagcactacggcctgcaccgcctc
gtggtgcaggtgaacgacagtgggcagccaccccagtccaccactgccctgctccacgtc
tttgtcaacgagagcctgtccaatgccacagtggtggaaagccaggtggcccgcagcctc
cacacacccctcgcccaggacattgctggcgaccccagctacgagctgagcaaacagcgg
cttagcatagtcattggtgtggtggcaggcatcatgactgtcatcctcctcatcctggtg
gtggtcatggcccgctactgccgctccaagggcaaacatggctacgaggccggcaagaag
gaccatgaggatttcttcaccccacagcagcatgacaaggccaagaagcccaagaaggac
aagaaaggcaagaagggcaagcagcccctctacagcagcatcgtcaccgtcgaggcttcc
aagcccaacgggcagcgctatgacagtgtcaatgagaagctctccgacagccctggtatg
gggcgataccgctcagtcaacggcggccctggcagccctgacctggccaggcactataag
tcgagctcgccgctgcccaccgtccagctgcacccgcagtcccccacggccggcaaaaag
caccaggcagtgcaggacctgcccccggccaacaccttcgtgggcgccggtgacaacatc
tccatcgggtcggaccactgctccgagtacagctgccaggccagcaacaagtacagcaag
cagccatttcgtagagtgacgttttctgttgtgagtcagcctcaggacccgcatcaaggg
tcattgcagagttgctatgacagcggtctggaggagtcagaaacaccaagcagtaagagt
tcatcagggccaagactgggtgcccttccactcccagaggacaactacgaaaggactacg
ccggatggcagtgttggtgaggcagagcatatggaaaatgattcaaggcctctgccagat
gtagccctgacagggaagtgtacccgagaatgtgatgaatatggccactcggactcctgc
tggatgccagttcgcacttctcctgagagaaagcagaagagccagccaaaactctccact
ttcatgcctgttgatgaacggggcagtcaggaaaagctggccaatggagaagcctccctc
atgggtgatcgcaacagaaacctccttaacaaaaagttgacctcatcctatgagaccttc
agcgcggctagtttcagcaaaaacgaagaaggcaatccagaggatatcccccttacacag
acaggggaatacaagccatctcctgtcaatactctaactagaagagaagtttacctgtag
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