Caloenas nicobarica (Nicobar pigeon): 135988409
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Entry
135988409 CDS
T11056
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04140
Autophagy - animal
cnic04148
Efferocytosis
cnic05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
135988409
04148 Efferocytosis
135988409
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
135988409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cnic04131
]
135988409
Membrane trafficking [BR:
cnic04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
135988409
Hops complex
135988409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
135988409
NCBI-ProteinID:
XP_065490422
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All DBs
Position
4:79153983..79166327
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AA seq
843 aa
AA seq
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MPTVCSAPCSRLSVPCLPVCPRRKVELYAMEWGLREDLRDCLVAAAPYGGPIALLKSNAR
REKSPGACPLLEIYSGSGLLLAAIPWKSGQLVQLGWTTSEDLLCIQEDGTVLIYNLFCEF
KRHFSMGNEVLQNHVLEAKVFHTEYGTGVAILTGAHRFSLATNIDDLKLRRMPEVPGLQK
PPSCWAVLSQDRVTIVLLAVGQDLYLLDNTSCSVVTPPGLSPSAGAYLQMAVSFNHRCLA
LFTDTGYLWMGLATLKEKICEFNCSIRSPPRQMVWCLRPRSRQRAVVLAWERQLMVVGNS
AECICFVLDEDSFLVPELDGVRILSRSSHEFLHEIPEASQEIFRIASMAPGALLLEAQKE
YEKESQKADEYLREIKDQKLLPEAVSQCIEAAGYEHEPETQKSLLRAASFGKCFIDKFPP
ESFVRMCQDLRVLNAVRDYQIGIPLTFTQYKRLTIEVLLDRLVLRRLYPLAIRICEYLRL
SEIQGVSRILAHWACYKVQQKDKSDEEVAQAINQKLGDTPGISYSEIAARAYDCGRTELA
IKLLEYEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVYTVVLHLKNELNRGTFFMTLQ
NQPVALSLYRQFCKHQERETLKDLYNQDDNHQELGNFHVHSSYAEKRIEGRVGALQNAVD
EYYKAKNEFAAKATEEQIKLLRLQRHLQEDLDKPYLDLSLHDTVTNLILDGHHKRAEQLY
REFKIPDKRYWWLKISALATRGDWEEMEKFSKSKKSPIGYLPFVEIAVKHHNRYEARKYA
PRVTPEQRVKAFVLVGDLEQAADAAIEHKNEAEMNFVLSKCGAGTEATVAEKLNRARAQL
LKK
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgcccactgtctgtagcgccccgtgcagccgtctgtctgtcccctgtctgcccgtgtgt
ccccgcaggaaggtggagctgtacgccatggagtgggggctgcgggaggacctgcgggac
tgcctggtggcggccgccccgtacggggggcccatagccctgctgaagagcaacgcgcgc
agggagaaatcccccggcgcctgcccgctgctggagatctactcgggctcggggctgctc
ctggccgccatcccgtggaagagcgggcagctggtgcagctgggctggaccaccagcgag
gacctgctgtgcatccaggaggacggcaccgtcctcatctacaacctcttctgcgagttc
aagcgccacttcagcatgggcaacgaggtgctgcagaaccacgtgctggaggcgaaggtt
ttccacaccgagtacggcaccggcgtggccatcctcaccggcgcccaccgtttctccctg
gccaccaacatcgacgacctgaagctgcgcaggatgcccgaggtccccggtctgcagaag
ccaccgtcctgctgggccgtgctgtcccaggacagggtgaccatcgtgctgctggcggtg
ggacaggacctctacctgctggacaacacctcctgctccgtggtgacccccccggggctg
agcccctccgccggcgcgtacctgcagatggccgtgtccttcaaccaccgctgcctggcc
ctcttcaccgacaccggctacctctggatggggctggccacgctgaaggagaagatctgc
gagttcaactgcagcatccgatccccaccccggcagatggtttggtgcctgcgtccccgc
agccggcagcgcgctgtggtgctggcctgggagcggcagctcatggtggtggggaactcc
gcggagtgcatctgctttgtcctggacgaggactcgttcctggtacccgagctggacggg
gtgcggatcctgtcccgctcctcccacgagttcctgcacgagatcccagaagccagccag
gagatcttccgcatcgcttccatggcgccgggggctctgctgctggaggcgcagaaggaa
tacgagaaggagagccagaaggcagacgagtacctgcgggaaatcaaggaccagaagctg
ctcccggaggccgtcagccagtgcatcgaggcagccggctacgagcacgagcctgaaacc
cagaaatcgctgctgagggcagcctccttcgggaaatgcttcatcgacaagttccccccc
gagagcttcgtgcgcatgtgccaggacctgcgggtgctcaacgccgtccgcgactaccag
atcggcatccccctcaccttcacccagtacaagcgcctcaccatcgaggtgctgctggac
aggctggtcctgcggcgcctctaccccctggccatccgcatctgcgagtacctgcggctc
tcggagatccagggcgtcagccgcatcctggcccactgggcctgctacaaggtgcagcag
aaggacaagtccgacgaggaggtggcccaggccatcaaccagaagctgggtgacacgccg
ggcatctcctactccgagatcgccgcccgggcgtatgactgcggcaggacggagctggcc
atcaagctgctggagtacgaaccgcgctccggggagcaggtcccgctgctgctgaagatg
aagcggagcaagctggccctcagcaaagccatcgagagcggggacaccgacctggtctac
accgtggtgctgcacctgaagaacgagctgaaccgcggcaccttcttcatgacgctgcag
aaccagccggtggccctgagcctgtaccgccagttctgcaagcaccaggagcgggagacg
ctgaaggacctgtacaaccaggacgacaaccaccaggagctcggcaacttccacgtccac
tccagctatgccgagaagcgcatcgagggacgggtgggagctctgcagaacgccgtggac
gagtactacaaagccaagaatgagtttgctgccaaggccacggaggagcagatcaagctg
ctacggctccagcgtcacctccaggaggacctggataagccctacctggacctgtcgctg
cacgacaccgtcaccaacctcatcctggatgggcaccacaagcgcgcggagcagctgtac
cgcgagttcaagatcccggacaagaggtactggtggctgaagatcagcgccttggccacc
cgcggcgactgggaggagatggagaagttctccaagagcaagaagtcgcccatcgggtac
ctgcccttcgtggagattgcggtgaagcaccacaaccggtacgaggccaggaaatacgca
ccccgggtcacccctgagcagcgcgtcaaggccttcgtgctggtgggggacctggagcag
gcagctgacgccgccatcgagcacaagaacgaggccgaaatgaatttcgtcctgtccaag
tgcggcgccggcaccgaggccactgtggccgagaagctgaaccgggcccgggcccagctg
ctcaagaagtga
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