Caloenas nicobarica (Nicobar pigeon): 135988410
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Entry
135988410 CDS
T11056
Symbol
SYNPO2
Name
(RefSeq) synaptopodin-2
KO
K24066
synaptopodin-2
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
135988410 (SYNPO2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cnic04990
]
135988410 (SYNPO2)
Domain-containing proteins not elsewhere classified [BR:
cnic04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
135988410 (SYNPO2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Calsarcin
Motif
Other DBs
NCBI-GeneID:
135988410
NCBI-ProteinID:
XP_065490424
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Position
4:11769031..11841706
Genome browser
AA seq
1086 aa
AA seq
DB search
MGTGDYLCIAMSGGAPWGFRLQGGKEQEQPLQIAKVRSKSKAAKAGLCEGDEVVSINGQP
CGDLTYAEVIVLMESLTDVLQMLIKRSSSGTNETLSAERENGKHDNMKNEDYRESTTLQN
NTAKEIPHGDLCITEIYCDTHQGGESNTHFSEIKQETTQSHRITPKVIGTSKVLVTDEAA
FRGKTEEKRPCTMVELQLSLSNDGHKGTNAPAVTLLGAEKCSPAGRGPSAQQDGTSPVMA
IPLGVKEGNIQWSSKVVQFSSSKEVKRIQGAVPTLPRVEVILDCLDREKEAARSVAERGC
VDSQVEGGQSEAPPSLLSFAISSEGTEQGEDNQHLERDHRPLKHRARHARLRRSESLSEK
QVKEAKSKCKSIALLLTAAPNPNSKGVLMFKKRRQRARKYTLVSYGTGELERDEDEGEEG
EGEGEEGDKENTFEVSLLATSESEIDEDFFSDIDDSKILTFDWDSGLLEVEKKTKSGDEM
QTLPETTGKGALMFAKRRQRMDQITAEQEEMKARTMHTEEQREATLSENFQRVSSSAYQT
KEEEMSRQQSCVSKSYPDVSQNHSKIVQQNGFGLAPHRNLSFQSSESQKAASLNKTAKPF
PSGVQNRAAAPFSPTRNVTSPLSDIPGPPPYCSISPPPEAFYRPVSAPVASRAAPTVWSP
TEPTEHIASRDERIAVPAKRTGILQEAKRRSTSKPMFNFKETPKVSPNPALLSLVHNAEG
KKGTGAGFESGPEEDYLSLGAEACNFMQTQASKQKAPPPVAPKPSLKVSPPAGTPVSPVW
SPPAVASNKAPSFPAPASPQAAYPAPLKSPQYPHSPVHPPSTLNLAGPFKGPQASLASPN
HTPKTPVTPSAGGTKPTFEMPPEMRGKGAQLFARRHSRMEKYVVDSETVQANMARASSPT
PSLPASWKYSSNVRAPPPVAYNPIHCPSFPSAATKPSSKSTAATKNTKRKPKKGLNALDI
MKHKPYQLDASLFTFQPPSPKESLAIKQTLKSPTSKQALPFRPPSAGSPPNARASSVYSV
PAYTSQPLFQSNASTPVNEFYSPTGYSAFSKPETTKSSSFIAPRPKFSAKKAGVTAQVWK
PSIIEE
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgggcacaggggattatctctgcattgctatgagtggaggggcgccttggggctttaga
ttgcaaggtggcaaggagcaagagcagcctttgcaaatcgccaaggttcgcagcaagagc
aaagcagctaaggctggactgtgtgagggagatgaggtggtatctatcaatggccagcct
tgtggagacttaacctatgctgaagtcatcgttctgatggaaagcctgactgacgtcctg
cagatgcttatcaagagatcctccagtggaacaaatgaaaccttgagtgctgaaagagaa
aacggaaagcatgataacatgaaaaatgaggactatagggagagcactaccctgcaaaat
aacacagcgaaggagataccccatggagatttatgcatcacagagatatactgcgacact
caccagggaggagaaagcaacacacacttttctgaaattaaacaagagaccacacaaagc
cacagaattactcctaaagtgataggcacctccaaagtgcttgtgacagatgaggctgct
ttcagagggaaaacagaagaaaaaaggccatgcactatggttgagctgcagttgtccctc
tcaaatgacgggcacaagggcaccaatgctcctgctgtgactctcttaggggcagaaaaa
tgcagccctgcaggaagaggacccagtgcacaacaagatgggactagccctgtaatggca
attcccctgggcgtgaaagagggcaacatccaatggtcaagcaaagtagtccagttttcc
agtagcaaagaggtcaagaggatccaaggtgcagttccaactctccccagggtggaggtg
atcctagactgtttggacagggagaaggaagcagccaggtctgtagctgaaagggggtgt
gttgattctcaagtggaaggagggcagtccgaagcacctccttcccttctctcctttgca
atctcatcagaaggcacagagcagggagaagacaaccagcacttggaaagggatcacaga
cctctcaagcacagggcgaggcacgcaaggctccggcgaagtgagagtctgtcagagaag
caggttaaagaagccaaatctaaatgtaaaagtattgcattgctgctgacagcagccccc
aatcccaattccaagggggtgttgatgttcaagaagcgtcgtcaaagggcaaggaaatat
actttagtcagctacggtactggggagttagaacgtgacgaagacgagggtgaagaaggt
gaaggtgaaggtgaagagggtgacaaagaaaacacttttgaagtgagtttgcttgcaaca
agtgagtcagaaatagatgaagatttcttctctgacattgacgacagcaagattctgacg
tttgactgggacagtggtctacttgaggttgaaaagaagacaaaaagtggagacgagatg
cagacgcttccggagaccacaggtaaaggggccctcatgtttgccaagagacggcagagg
atggatcagattacagccgagcaagaggagatgaaggcacgcacaatgcatacagaggaa
caaagggaagccaccctgtcagagaacttccagagagtaagctcttcagcctatcaaaca
aaagaagaagaaatgtcaaggcagcagagctgcgtgagcaaaagctacccagacgtgagc
cagaatcatagcaaaattgtacagcaaaatggctttggcttagcaccacacaggaacctc
tcttttcagtcctctgaatctcaaaaagcagcatctttgaataaaacagctaagcccttc
ccttctggggttcaaaaccgagcagctgcaccattttcacccacaagaaatgtcactagt
cctctttcggatataccaggaccacctccttactgctctattagcccaccacctgaggct
ttctacagacctgtttcagctcctgtagccagcagagctgccccaactgtgtggtcacct
actgagccaacagaacacatagcatccagagatgaaagaattgcggtgccagccaaaaga
actgggatactgcaagaggcaaagagaagaagcacttcaaaacctatgttcaatttcaaa
gaaacacccaaagtaagtcctaatcctgccctgttgtctcttgtacacaatgcagagggc
aaaaaaggtactggagctggttttgagtcaggacctgaagaagactacctcagtttggga
gcagaagcttgcaatttcatgcagactcaagcatctaaacaaaaggcccctcctcctgtt
gctccaaagccttcactcaaggtctctcctcctgctggtaccccagtttcaccagtttgg
tcacctccagctgtggcttctaacaaggctccttctttcccagcaccagcctcacctcag
gcagcatatcctgcaccactcaaatctccacagtatcctcattctcctgtccatccccca
agtactcttaacctagccggtcctttcaaggggcctcaagcaagcctagcgagtccaaac
catacacccaagacaccagtcacaccaagtgctggaggaacaaagccaacctttgagatg
ccaccagagatgcgtggaaaaggagcccagttatttgccagaaggcactctcgaatggag
aagtatgtggtagattcagagactgtgcaggcaaacatggcacgagcctcatctccaact
ccatctttaccagcttcttggaaatattcatctaatgtccgagcacccccacctgttgcc
tataatcccatccactgcccatcttttccttctgctgctaccaagccttcctctaagtcc
actgctgctaccaaaaatacaaaaagaaaacctaagaaaggtctcaatgctttggatatt
atgaaacataaaccctatcaacttgatgcatctttattcacttttcaacctcctagtcct
aaggaaagcctagctattaagcagacattgaagtcgcctacttcaaagcaagctctgcct
ttcagaccacctagcgctggctctcctcctaacgcccgggcatcttctgtgtactctgtg
ccagcctacacttcacaacctttgttccagtcaaatgcctctacccctgtaaatgaattc
tattcacctacaggttactctgcattttctaagccagaaaccaccaaatcctcttcgttt
attgctccaaggccaaaattttcagcaaagaaagctggcgtcactgcacaggtgtggaag
ccatcaattattgaagagtaa
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