Caloenas nicobarica (Nicobar pigeon): 135988769
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Entry
135988769 CDS
T11056
Symbol
NFKB1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04010
MAPK signaling pathway
cnic04210
Apoptosis
cnic04218
Cellular senescence
cnic04620
Toll-like receptor signaling pathway
cnic04621
NOD-like receptor signaling pathway
cnic04622
RIG-I-like receptor signaling pathway
cnic04623
Cytosolic DNA-sensing pathway
cnic04625
C-type lectin receptor signaling pathway
cnic04920
Adipocytokine signaling pathway
cnic05132
Salmonella infection
cnic05164
Influenza A
cnic05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
135988769 (NFKB1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
135988769 (NFKB1)
04218 Cellular senescence
135988769 (NFKB1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
135988769 (NFKB1)
04621 NOD-like receptor signaling pathway
135988769 (NFKB1)
04622 RIG-I-like receptor signaling pathway
135988769 (NFKB1)
04623 Cytosolic DNA-sensing pathway
135988769 (NFKB1)
04625 C-type lectin receptor signaling pathway
135988769 (NFKB1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
135988769 (NFKB1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
135988769 (NFKB1)
05168 Herpes simplex virus 1 infection
135988769 (NFKB1)
09171 Infectious disease: bacterial
05132 Salmonella infection
135988769 (NFKB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cnic03000
]
135988769 (NFKB1)
Transcription factors [BR:
cnic03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
135988769 (NFKB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Death
Ank_KRIT1
Motif
Other DBs
NCBI-GeneID:
135988769
NCBI-ProteinID:
XP_065491045
LinkDB
All DBs
Position
4:5780312..5837442
Genome browser
AA seq
978 aa
AA seq
DB search
MAGEDSYIMSDPQMFTMDQFMGMNALFNNTNYITSDLPLRTDGPYLQIIEQPKQRGFRFR
YVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKYVHLHAHSLVGKFC
EDGVCTVNAGPKDMVVGFANLGILHVTKKKVFETLEARMIDACKKGYNPELLVHPELGYL
QADACGDRQLTEREREIIRQAAVQQTKEMDLSVVRLMFTAFLPDSNGSFTRKLDPVISDA
IYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEDENGGMWEGFG
DFSPTDVHRQFAIVFKTPKYRDVNITKPASVFVQLRRKSDLETSEPKPFLYYPEIKDKEE
VQRKRQKLMPNFSDGYGGGSGGGGGGMYGGGGGGAGSGFSYPSYGYSTFAGMHFHPGITK
SNAGMKHELSNSTADQDGKNSDKQSDKWDTKHEMKMETMEKNECRTSDENEKEDAASSCK
TEVNEADCRWQDGLFLEKAMQLAKRHCNALFDYAVTGDVKMLLAVQRHLTVVQDDNGDNV
LHLAIIHLHAELVKNLLEVMRDLNSNDIINMRNDLYQTPLHLAVITKQAEVVEDLLRAGA
DVSLLDRHGNSILHLAAAEGDDKILSVLLKHKKILSMVDLSNGEGLSAIHMVVMANSMSC
LKQLIAAGVNVNAQEQKSGRTALHLAVEHENIPLAGCLLLEGDVDVDSTTYDGTTPLHIA
AGRGSTKLAAVLKAAGADPHIENFEPLFDLDDVKADEDDDEGIVPGTTPLDMAADCEVYD
ILNGKPYEAAVVSEDLLPQGHLRELNESCRMQLYKLLEAPDPRKNWSTLAQKLGLGILNN
AFRLSPSPSKTLLDNYEVSGGTVQELIAALKQMDHTEAVEMIQKALSISRSPSQQQDNTA
KALPLSSPPTSANRETGELYNSKFQDTESTCDSGVETSFRRLSFTYLDSLNSKSSVTLSK
MTLGYSQESSAQSNYIAN
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagaagattcctatattatgtccgatccccaaatgtttacaatggatcagttc
atgggaatgaatgcgttattcaataatacaaattacatcacttcagacttaccactacga
acagatggaccctatcttcaaatcatagaacaaccaaaacagagggggtttcgttttcga
tatgtatgcgaagggccttcacatggtggacttcctggtgcttctagtgaaaagaacaaa
aagtcataccctcaggtcaaaatctgcaattacgttggacctgcgaaagtaatcgtccag
ttagttactaatggaaaatacgtccacttacatgctcacagcttagtgggtaaattttgt
gaagatggagtatgcacggttaatgcaggacctaaagatatggttgtagggtttgcaaat
cttggaatacttcacgtcacaaagaagaaagtgtttgaaactctggaagcacgcatgata
gacgcttgcaaaaagggatacaacccagaactcctggtacatcctgaacttggctatctg
caggcggatgcgtgtggagacagacagctaacggaacgagaaagagaaattattcgtcag
gcagccgtacagcagactaaagaaatggatctcagtgtggtgcgtcttatgtttacagcc
tttctccctgacagtaatggtagtttcacacggaaacttgatcctgttatatcagatgca
atatatgacagcaaagctcccaatgcctccaacctaaaaatcgtaagaatggacagaaca
gcagggtgtgtaacaggaggggaagagatttaccttctctgtgacaaggttcagaaagat
gatattcaaatacgtttctatgaagaggatgagaatggaggtatgtgggaaggctttgga
gacttttctcctacagatgtacacaggcagtttgccattgtgttcaaaacacccaagtat
cgagatgtcaatatcacaaagccagcatctgtatttgtacaactgcggaggaaatctgat
ctagaaacaagtgaaccaaagccttttctctactatccagaaatcaaagataaagaagaa
gtgcaaaggaaacgacagaagctcatgccaaacttctcagatggctatggtggaggcagt
ggcggaggaggcggtggcatgtatggaggaggaggtggtggtgccggctctgggttcagt
tatccttcatatggatactccacttttgcagggatgcatttccaccctggcataacaaag
tccaatgctggaatgaaacacgaactatcaaatagcacagctgatcaagatgggaagaat
tctgataaacaaagtgacaaatgggacacgaaacatgaaatgaaaatggaaactatggaa
aagaatgagtgcagaacctctgatgaaaatgagaaagaggatgctgcttcttcctgtaaa
actgaagtaaatgaagcagattgcaggtggcaggacggtctgttcctggagaaggccatg
cagcttgccaagcgtcactgcaatgctctcttcgattatgctgtaactggagatgtgaag
atgctgttggctgttcagcgccatctcactgttgtccaggatgataacggagacaatgtc
cttcatttagcaattatccaccttcatgccgagctggtgaaaaacctcttggaagtgatg
cgtgatctgaattctaatgacatcattaacatgagaaatgacctttatcagacccccttg
cacctggcagtgatcaccaagcaggcagaggtcgtagaagacttgctgagggccggagca
gatgtcagccttctggatcgccatggcaattccatcttacatttagccgctgctgaagga
gacgacaagattttgagtgtactgctcaagcacaagaagatcttatcgatggttgacctt
tccaacggtgaaggtctcagtgcaattcacatggtggtgatggcaaatagcatgtcctgc
ctcaaacagctgattgctgctggcgttaacgtcaacgctcaggaacaaaaatctggacga
actgcattgcatttagctgttgaacacgagaacatccctttggcaggctgccttttgctt
gagggtgatgtggatgtggacagcactacgtatgatgggacaactcctcttcacatagca
gctggaaggggctctacaaaactggcagcagttctcaaagcagcaggtgcagatcctcac
attgagaactttgagccattgtttgatctagacgatgtgaaagctgatgaagatgatgat
gaagggattgtgcctggaacaacaccgctggatatggcggccgactgtgaggtgtatgac
atattaaatggcaaaccctatgaggcagcagtggtttcggaggacttactgccacaaggg
catttgagagagctgaatgaaagttgcaggatgcagctttacaaactattggaagcacct
gatccaaggaaaaactggtccacactagcacaaaaactgggtcttggcatacttaacaat
gccttcaggttgagcccttccccatcaaaaactctgctagataactatgaggtttctggt
ggtacagttcaagagttgattgctgctttgaaacagatggatcacacagaagccgtcgaa
atgattcaaaaagcactgtccatctcacgaagcccatctcagcagcaggacaatacagca
aaagctcttccgttgtcatcaccacccacctctgcaaacagagagacaggtgagctttac
aatagcaaatttcaagacaccgaaagcacgtgtgacagcggtgtggagacctccttccgc
agactgagctttacttacttagactctctgaacagcaagtcatcagtaacactgagcaaa
atgaccctgggctacagccaggaaagttcagcgcaaagcaattacatagccaactag
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