Caloenas nicobarica (Nicobar pigeon): 135988804
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Entry
135988804 CDS
T11056
Symbol
CSTF3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135988804 (CSTF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135988804 (CSTF3)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
135988804 (CSTF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
135988804
NCBI-ProteinID:
XP_065491121
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All DBs
Position
5:60384171..60433847
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AA seq
718 aa
AA seq
DB search
MSGEGTAGDQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVA
QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYK
EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP
MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP
QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQ
YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV
HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALME
YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE
KSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSTS
ELKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAP
PGLHPVPGGVFPVPPAAVVLMKLLPPPVCFQGPFVQVDELMEIFRRCKLPDTVDEAVRII
TGGLPEIAVEGNGPVENNAMLNKTVKRPHEDSDDDEEKGSVVPPVHDIYRARQQKRIR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccggagagggaaccgcgggcgaccaggctgctgaatatgtcccagaaaaagtgaag
aaagctgaaaagaaactagaagaaaatccatatgaccttgacgcttggagcattctcatt
cgagaggcacagaatcaacctatagacaaagcacggaagacctatgaacgccttgttgcc
cagttccccagttctggcagattctggaaactgtacattgaagcagagattaaagcaaaa
aattatgacaaagtggagaagttatttcagcgatgccttatgaaggttttacacattgat
ttgtggaaatgttacctttcctatgtacgagaaaccaaggggaagctacctagttacaaa
gaaaaaatggctcaggcatatgattttgctctggataagattggcatggaaatcatgtca
taccagatctgggtggattacatcaattttttgaagggcgtagaagcagtaggatcttat
gcagagaaccagaggataacagctgtccgtagggtttaccagcgtggttgtgtgaatcca
atgataaacatagaacagctctggagggattataacaaatacgaagagggaatcaatatt
cacttagctaagaagatgattgaagacaggagtagagattatatgaatgcacgacgtgta
gcaaaggagtatgagacagtgatgaaaggtctggaccgcaatgctccctctgtgcccccc
caaaataccccgcaggaggctcagcaggtagacatgtggaagaaatacatccagtgggaa
aagagcaatcctctgcgtacagaagatcaaaccctcataacaaaaagagttatgtttgcc
tatgagcaatgccttttggttctgggacatcatccagacatctggtatgaagctgcacag
tacctcgagcaatcgagtaaattgcttgctgaaaaaggggacatgaacaatgctaaactt
ttcagtgatgaggctgctaatatttatgaaagagcgatcagcactttattaaagaagaat
atgcttctttattttgcatatgcagattatgaagagagtcggatgaagtatgagaaagta
cacagcatatataaccgcctcctggctattgaagacattgatcccactctggtttacatc
caatatatgaaatttgcaaggcgagcagaaggcataaaatctggaagaatgatatttaag
aaagcaagagaggatacccggacccgccatcacgtctacgttacagcagctttaatggag
tattattgtagtaaggacaagtctgtggcctttaagatttttgagctagggctgaaaaaa
tatggggacattccagaatacgtactggcgtatatcgactacctgtctcaccttaacgag
gacaataatacaagagttttgtttgaacgtgttttaacttcagggagccttccacctgag
aaatctggggaaatctgggctcggtttttagcttttgaaagtaacattggtgatctagct
agtatcctgaaagtggaaaaacggaggtttacggcattcaaggaagaatacgagggtaaa
gaaacagctctgctggtagacaggtataagttcatggatttgtacccctgctctacgagt
gaactgaaggcccttggttataaggacgtgtcccgtgccaagctggcagccatcattcca
gacccggtggttgcaccttccatcgtgcctgttctcaaagatgaagtggacagaaaacct
gaatatcccaaacccgacactcagcaaatgattccatttcagccaagacacttagcacct
ccaggtttacatcccgtcccagggggagtatttcccgttccaccagcagctgtcgttctc
atgaagctcctgccacctcctgtttgtttccagggtccctttgttcaagtggatgagctc
atggagatattcagaagatgcaaactgccagacactgttgatgaagctgtgcgaataatt
actggtggcctaccagaaatagctgtggagggcaacggacctgtggaaaataacgcgatg
ctcaataaaactgttaaaagaccccacgaagactctgacgacgatgaggagaaaggatct
gtagttccccccgtacacgacatttacagagcacgacagcaaaagagaatccggtga
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