Caloenas nicobarica (Nicobar pigeon): 135988999
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Entry
135988999 CDS
T11056
Symbol
COPB1
Name
(RefSeq) coatomer subunit beta
KO
K17301
coatomer subunit beta
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cnic04131
]
135988999 (COPB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cnic04147
]
135988999 (COPB1)
Membrane trafficking [BR:
cnic04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
135988999 (COPB1)
Exosome [BR:
cnic04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
135988999 (COPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatamer_beta_C
Coatomer_b_Cpla
HEAT
HEAT_2
Cnd1
HEAT_EZ
Arm
MMS19_N
CRAL_TRIO_2
AP4E_app_platf
Motif
Other DBs
NCBI-GeneID:
135988999
NCBI-ProteinID:
XP_065491522
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Position
5:55716537..55737259
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AA seq
953 aa
AA seq
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MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKLKTEALKKVIIMILNGEKLPGLLM
TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLQEMILVCDAYRKDLQHPNEFIRGST
LRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDF
LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPS
ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLI
VLDRLVELKEHPSHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVL
KKEVIKTNNVTEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDNNEAAAADV
LEFVREAIQRFDNLRPLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEVR
RSLGEIPIVESEIKKEAGELKPEEEVSVGPAQKLVTEMGTYATQSALSSSRPAKKEEDRP
PLRGFLLDGDFFVAASLATTLTKIALRYVSLVQEKKKQNSFIAEAMLLMATILHLGKSSL
PKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEK
RNVTVQPDDPISFMQLTAKNEMSSKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLT
GFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPH
DFANIKANVKVASTENGIIFGNIVYDISGAASDRNCVVLSDIHIDIMDYIQPASCTDAEF
RQMWAEFEWENKVTVNTNIIDLNEYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSI
FGEDALANVSIEKPIHLGPEAPVTGHIRIRAKSQGMALSLGDKINLSQKKTSL
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgacagctgcagagaacgtgtgttacacgttaatcaatgttccgatggattcagaacca
ccttctgaaatcagcttaaaaaatgacctagaaaaaggagatgtcaagctgaagacagag
gccttgaagaaagtcatcattatgattctgaatggtgaaaaactgcctggccttctgatg
accattatacgttttgtactgcctctccaagatcataccatcaaaaaactgctgcttgtc
ttttgggagatagtgcccaagacgactccggatggacggctattgcaggaaatgatcctt
gtgtgtgatgcatacagaaaggatcttcagcacccaaatgaatttatccgaggatctact
ctccgttttctttgcaagctgaaagaggcagaactgctggaacctttgatgccagccatt
cgtgcgtgtctggagcatcgtcacagctacgtgcgcagaaatgcagttcttgcaatttac
accatttatagaaattttgaacatcttatacctgatgctcctgaattgatccatgatttc
ttggtgaatgagaaagatgcaagctgcaaaagaaatgcatttatgatgctaattcatgca
gatcaggatcgagctttggattatttgagtacctgtattgaccaagtccagacatttggt
gacatactgcaactggttattgttgaactaatttataaggtctgtcatgcaaatccatca
gagagagctcggtttatccgctgcatctacaacttactgcagtcatcgagtcctgcggtg
aagtatgaagctgcaggtactctggttacactctccagtgcaccaacagcaatcaaggca
gctgcccagtgctacatagatttgattattaaagaaagtgataataatgtgaaactgatt
gttttggatcggttggttgaattaaaggagcatccctcccatgaacgagtgttacaggat
ctagttatggacatcctccgagtgttgagtactccagatctagaagtgcgcaaaaaaacc
cttcaactggctctggatcttgtctcttcaaggaatgtagaggagctcgtgattgttctg
aagaaggaggtgattaaaactaacaatgtgacagagcatgaagatacagacaagtacaga
cagctgcttgttcgtacattgcattcctgtagtgttcggtttccagatatggctgcaaat
gttattccagtgctgatggagttcctgagtgataataatgaagcagcagctgctgacgtc
ttggagtttgtgcgggaagcgatccagcgatttgataacctcagacctcttattgttgag
aagatgcttgaagtctttcacgctattaaatctgtcaagatttatcgaggagctttatgg
atccttggagaatattgcagcacaaaggaagatatacaaagtgtaatgacagaagttcgc
agatcacttggagagatcccgatagtagaatctgaaataaagaaagaagctggtgagcta
aaacctgaagaagaggtgtctgtgggtccagcccaaaaattggtgacagagatgggcact
tatgccacacagagtgctctcagtagttccagacctgccaaaaaggaagaagacagacct
cctttacgaggattcctgcttgatggcgatttctttgttgcagcttctctcgctacaact
ttaactaagattgctttacgatatgtgtcactagttcaggaaaagaagaagcaaaattcc
ttcattgctgaagctatgctgctgatggccaccattctccatttgggaaagtcctctctt
cccaagaagccgattacagatgatgatgtggatcgtatttccttgtgtctgaaagttttg
tcagaatgttctcctctcatgaatgatattttcaacaaagaatgcaggcagtccctctct
cacatgctgtcagccaagctagaagaggagaaactttcccagaagaaggaatctgagaag
aggaatgtgacggttcagccagatgatcccatttccttcatgcagcttactgctaaaaat
gaaatgagctcaaaagaagaccagtttcagcttagccttcttgcagcaatgggaaacaca
cagaggaaagaagctgctgatcctcttgcgtccaaacttaataaggttactcaactgaca
ggtttctcggaccctgtctatgcagaagcgtatgtccatgtcaatcagtatgacattgtg
ctggatgtgctggtggtgaaccagaccagtgacaccctgcagaactgcacgctagagctg
gccacgctaggtgacttgaaacttgtggaaaaaccatctcctctgacacttgctccacat
gattttgcaaacattaaagctaacgtcaaagttgcttcaacagaaaatggaataattttt
ggtaatattgtgtatgacatctctggagcagcaagcgacagaaactgtgtggtgctcagt
gatattcacatcgacatcatggattacatccagcctgcttcttgtacggatgcggagttc
agacagatgtgggcagaatttgagtgggaaaacaaagttacagtgaataccaatatcatt
gatctaaatgaatacttacagcacatactgaagtcaaccaatatgaaatgcctgactcca
gagaaggcactttctggttattgtggcttcatggcggccaatctttatgcgcgttccata
ttcggagaagatgcacttgcaaacgtcagcattgaaaagccaattcatcttggaccagag
gcacctgtcactggtcacatacgaatccgtgcaaagagtcagggaatggccctgagtctt
ggagataagatcaatctgtctcagaagaaaacaagtttataa
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