Caloenas nicobarica (Nicobar pigeon): 135989171
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Entry
135989171 CDS
T11056
Symbol
HIF1A
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04137
Mitophagy - animal
cnic04140
Autophagy - animal
cnic04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
135989171 (HIF1A)
04137 Mitophagy - animal
135989171 (HIF1A)
04148 Efferocytosis
135989171 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cnic03000
]
135989171 (HIF1A)
Transcription factors [BR:
cnic03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
135989171 (HIF1A)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
135989171
NCBI-ProteinID:
XP_065491884
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Position
5:6126151..6160498
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AA seq
811 aa
AA seq
DB search
MESPGGVTDKKRISSERRKEKSRDAARCRRSKESEVFYELAHQLPLPHTVSAHLDKASIM
RLTISYLRMRKLLDAGELETEAKMEKELNCFYLKALDGFVMVLSEDGDMIYMSENVNKCM
GLTQFELTGHSVFDFTHPCDHEELREMLTHRNGPVKKGKEQNTERSFFLRMKCTLTSRGR
TVNIKSATWKVLHCTGHIRVYDTCGNQTHCGYKKPPMTCLVLICEPIPHPSNIEVPLDSK
TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV
TTGQYRMLAKQGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSGIVQKDLIFSLGQTECM
LKPVESPDMKMTKIFSKDDLDDTNSLFEKLKQEPDALTVLAPAAGDTIISLDFSSNESDE
QQCDEVPLYNDVMLPSSSEKLQNINMAMSPLPASETTKPLRSNADPALNREVVSKLEPNT
EPLELSFTMPQAQERPTSPSDASTSQSSPEPSSPNDYCFDVDNEMANEFKLELVEKLFAI
DTEAKNPFSTQETDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSSGSQNTATITIFQQT
QTPSSTADEIKPATERVDDVKTLIVPSSPVHIISETSSAPASPYSGNRSRTASPIQAGKG
TVDQTEKLCPGAPSLLTVTLNKRSTAMDEELNPKMLALHNAQRKRKMEHDGSLFQAVGIG
SLFQQTGDRGGNATLAWKRVKGCKTNGHNGVEQKTIILLSTDIASKLLGQSMDESGLPQL
TSYDCEVNAPIQGNRNLLQGEELLKALDQVN
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggagagccccggcggcgtcaccgacaagaaaaggattagctcggaacgtagaaaagag
aagtctagagatgcagcgcggtgccgacggagcaaggaatcggaagtgttctacgagctt
gctcatcagctgcccctgccccacaccgtgagcgcacacctggacaaggcatccatcatg
agactgaccatcagctacttgcgcatgaggaagctcctagatgctggtgagctggagaca
gaagccaaaatggagaaggaactgaactgtttctacttgaaagctcttgatggatttgtc
atggttctgtctgaagatggggacatgatttacatgtctgaaaacgtgaacaagtgtatg
ggactcactcagtttgagctaacggggcacagcgtatttgatttcactcatccatgtgac
catgaagagctgagagaaatgcttacacacagaaatggtcccgtgaaaaagggcaaagag
caaaacacggagcgcagcttttttctcagaatgaagtgtacactgactagcaggggccga
acagtgaatataaagtctgctacgtggaaggtactccactgcactggacatattcgcgta
tatgacacgtgcggtaaccaaactcactgcggctacaaaaagcctcccatgacgtgtctg
gtgttgatctgtgaacctattcctcatccatcaaacattgaggtccccttggacagtaaa
acgttcctcagtcgtcacagtcttgatatgaaattttcctattgtgatgaaagaattaca
gagttgatggggtatgagccagaggaactcctgggtcgctctatctacgagtattatcat
gcgctggactctgaccatctgaccaaaacacaccacgacatgttcacaaaagggcaggtg
acaacaggacagtacagaatgcttgcgaaacaaggtggctacgtttgggttgaaactcaa
gcgactgttatctacaacactaagaattctcagccgcagtgcatagtgtgtgtaaattat
gtgttgagtggaattgttcagaaggacttaattttttccctcggacaaactgagtgtatg
ctgaaaccagtagagtctcctgatatgaaaatgaccaaaatattcagcaaagatgacctg
gatgataccaacagcctttttgaaaaacttaagcaggaaccagatgctttaactgtgctg
gccccagctgctggagacacaattatctccctagatttcagcagtaatgagtctgatgag
caacaatgtgatgaagttcctttgtataatgatgtaatgctcccctcatccagtgagaaa
ttgcagaatataaatatggcaatgtccccactacctgcctctgaaactacgaagccactt
cgtagcaacgctgatcccgcactcaatagagaagttgtatcaaagctggagccaaacaca
gagccgctcgaactttcttttaccatgccgcaggcgcaagagcgaccgaccagcccttct
gatgcgagtaccagccaaagttcacctgagcccagtagtcccaacgactactgctttgat
gtggataatgagatggctaatgagttcaaactggaattagtggagaaactctttgcgata
gatacagaagcaaaaaatccattctctactcaggaaactgatttagacttggagatgttg
gctccttacatcccaatggatgatgacttccagttgcgctcctttgatcagctgtctcca
ctggaaagcagttcttctggctctcaaaacacagccaccattaccatattccagcagact
caaacaccatcaagtactgctgatgaaataaaaccagcgacagaacgtgtggatgatgtg
aagacgctaattgttccttcatctcctgtccacataatcagtgaaacgagtagtgcccca
gcatcaccttacagtgggaacaggagtcgaactgcgtctccgatccaagcaggaaaagga
acagtggatcagacggaaaaattgtgtccgggagcgcccagcttgctaacggtcacgctg
aacaaaagatctactgcaatggatgaagaactaaatccaaagatgctagctttgcataat
gctcagagaaaacgaaaaatggaacatgatggttcactttttcaggcagttggaattggg
tctttattccagcagacaggtgaccgtggaggaaacgcaacacttgcttggaaacgtgta
aagggatgtaaaacaaacggtcataacggagtggagcaaaagacaatcattctattatcg
actgacatagcaagtaaacttctagggcagtcgatggatgagagtggactaccccaactc
acgagttacgactgcgaagtaaatgctcccatacaaggcaacagaaacctgctacagggg
gaagaactgctcaaagctctggatcaagttaattga
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