Caloenas nicobarica (Nicobar pigeon): 135989256
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Entry
135989256 CDS
T11056
Symbol
SAMD4A
Name
(RefSeq) protein Smaug homolog 1 isoform X1
KO
K27396
protein Smaug
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135989256 (SAMD4A)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
135989256 (SAMD4A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
PHAT
SAM_2
Motif
Other DBs
NCBI-GeneID:
135989256
NCBI-ProteinID:
XP_065492044
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Position
5:complement(3348510..3458373)
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AA seq
732 aa
AA seq
DB search
MMFRDQVGVLAGWFKGWNECEQTVALLSLLKRVSRTQARFLQLCLEHSLADCTELHILEG
EANNPGIINQWQQESKDKVISLLLTHLPLLKPGNIEAKVEYMKLLPKILAHSIEHNQHIE
ESRQLLSYALIHPATSLEDRSALAMWLNHLEDRTSGGFGGQSRGRSDSVDYGQTHYYHQR
QNSDDKLNGWQNSRDSGISVSASSWQDKNLACENGHLPLYSSSSVPTTINTIGTSTSTIL
SGQTHHSPLKRSVSLTPPMNVPNQPLGHGWMSHEDLRARGPQCIPSDHAPLSPQSSVASS
GSGGSEHLEDQPSARNTFQEEGSGMKDVPAWLKSLRLHKYAALFSQMTYEEMMALTECQL
EAQNVTKGARHKIVISIQKLKERQNLLKSLERDILEGGNLRVPLQELHQMILTPIKAYSS
QNSSTEEHSRDADSHHPSSLIGSDSQGSDCKDSAAGGMQQHHLPGCEGESGGAPLPEGDL
PGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCLIHEAFTDIQKKRLLSWKQQVQKLF
RSFPRKSLLELSGYRQQRSRGFGQSNSLPTAGSAGAGLGRRNPRQFQLPSRNLPTARLGL
LGPSGLLGTPQRSPAASPAILKQGRQNLWFANPGGSNSMPSRSHSSVQRTRSLPVHTSPQ
TMLMFQQPEFQVPVTEPDINNRLESLCLSMTEHALSGEHSLLLGLFQHVHAASAEPPATC
PGPPKSWDRLWL
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgatgtttcgagaccaggtcggtgtcttggccggttggttcaagggctggaacgagtgc
gaacagactgttgcgctgctctcgctcctcaaacgcgtcagccggacccaagctcgcttc
ctccagctctgcctggagcactccctggccgactgcaccgagctccacatcctcgaaggc
gaggccaacaaccccggaatcattaaccaatggcaacaggaatccaaggataaagtgatt
tccctattgttaacccacctgcctttactgaagcccggaaacatcgaggcaaaagtcgaa
tacatgaaactcttgcctaaaatcctggcccactcgatcgaacacaaccaacacatcgag
gagagcagacagctgctgtcctacgccttgatacaccccgccacctccttggaggacagg
agcgccctggccatgtggctcaaccacttggaggaccgcacgtcgggtggcttcggcggc
cagagcaggggtcggtcggattcggtggactacgggcagacgcactactatcaccaaaga
caaaactccgatgacaaactcaacggatggcagaactctcgagactcgggcataagcgtc
agcgcttccagctggcaggacaaaaacctggcgtgcgagaacggccatctgcccctctac
tcctcctcctccgtccccacgaccatcaacaccatcggcactagcacaagcaccattctc
tcaggccagacacaccacagccctttgaaacgctctgtgtcccttaccccacccatgaat
gtgccaaaccaacctctaggacatggatggatgtctcatgaggacttacgagctagagga
ccccagtgcatcccttccgatcatgcccccctgtctccacaaagcagtgtagcctcttcg
ggaagtggtgggagtgaacatttagaagatcagccttctgctcgtaacacattccaggag
gaagggagtgggatgaaagatgtcccagcttggctgaagagcctccggctgcacaagtat
gctgccctcttctcgcagatgacgtacgaggagatgatggccctcactgaatgccagctc
gaggcacaaaacgttaccaaaggcgcaagacacaagatagtcatcagtatccaaaagtta
aaagagagacaaaacctactcaaatctttagaaagggacatcctggaaggtggcaacttg
cgcgtcccactgcaggagctacaccaaatgatcctcacccccatcaaagcctactcttcc
caaaactccagcacggaggagcacagccgggacgcggattcgcatcacccctcctccctg
atcggctccgacagccaaggctctgactgcaaggactctgccgcgggggggatgcagcag
caccatttaccgggatgcgagggggagtcggggggggcccctttgcccgaaggtgacctg
cccggccagttcaccagagtgatggggaaagtatgcacacaactgttagtttcccgacct
gacgaagagaatataagttcctatttacagctcatagacaaatgtctaatccatgaggcg
tttacagatatccagaagaagcggctgctgtcatggaaacagcaggtgcagaaactcttt
cggtctttccctcggaaatccctcctggagctgtcgggctatcggcagcagaggagccga
ggctttggccagtccaactccttaccgacagccggatcagctggggcaggactgggacgg
cgaaacccccgccagttccagctcccgtcccgcaacctccccacggcccggctggggctg
ctgggtcccagtgggctgctgggcaccccccagcgcagcccggccgccagccccgccatc
ctcaagcaaggcagacagaacctctggtttgccaaccccgggggcagcaacagcatgccc
agccggagccacagctcggtgcaaaggacgcgctcgctgccggttcacacctccccgcag
accatgctgatgtttcagcagccagagttccaggtgccggtgacagaacctgacatcaac
aacaggctggagtccctgtgcctgagcatgacggagcacgcgctcagcggtgagcactcc
ctcctcctcgggctcttccagcacgtccacgccgcctccgccgagccccccgccacctgc
cccgggcccccaaaaagctgggacaggctgtggctgtga
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