Caloenas nicobarica (Nicobar pigeon): 135989681
Help
Entry
135989681 CDS
T11056
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03015
mRNA surveillance pathway
cnic03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135989681 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
135989681 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135989681 (CPSF6)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
135989681 (CPSF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
135989681
NCBI-ProteinID:
XP_065492760
LinkDB
All DBs
Position
1:complement(58924753..58953188)
Genome browser
AA seq
583 aa
AA seq
DB search
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDSLPPSV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPPSNRGRGRFPGAIPGGDRFPGPAGPGGPPPPFPAGQTPPRPP
LGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV
PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA
FFPPPANSGIPTSDSRGPPPTDPYGRPPPYDRGDYGPPGRRFTGNNMSIREKLHIPFYGR
HTKNNTQNSGREMDAARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLV
TAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRRERSRERDHSRSREKSRR
HKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgtggaccacatcgacatctacgccgatgtgggcgaggaattcaaccag
gaagctgaatatggtggacatgatcagattgatttatatgatgatgtaatttctccatct
gcaaataatggagatgccccagaagatcgtgattacatggattctctcccaccatctgtt
ggggatgacgtaggtaaaggagctgcaccaaatgttgtctatacatatactggaaagaga
attgccttgtacattggaaatcttacttggtggacaacagatgaagacttaactgaagcg
gttcattcactgggggtaaatgatattttggagataaaattttttgaaaaccgcgctaat
ggccagtctaaagggtttgcccttgtgggtgtgggatcagaagcatcctccaaaaagctg
atggatttattgcctaaaagagaattgcatgggcagaatcctgttgtgactccatgtaat
aaacaatttctgagtcagtttgagatgcagtcaaggaaaaccacacaatctggccagatg
tctggggaaggtaaagctggtcccccaggaggaagttcacgagcagcatttccacctagt
aatagagggcgaggtcgttttccaggtgccattcccggtggagacagattccctggacca
gcagggccaggagggccaccaccacctttcccagctggacaaactcccccacgtccacct
ttaggtcctcctggcccaccaggcccaccaggccctccacctcctggtcaagtcctccca
cctccgttagctggacctcctaatcgtggtgaccgtccaccaccaccagttctgtttcca
ggacagccctttggtcagcctccacttgggccacttcctccaggccctccaccacctgtt
ccaggctatgggccaccaccaggtccaccaccacctcagcagggtccacctccacctcca
ggtccatttccccctcgtccgcctggtcctcttggcccacccctgactcttgctcctcct
ccacatctccctgggccacctccaggtgctccaccacctgcaccacatgtgaatccagct
ttctttcccccacctgccaatagtggcatacctacttcagacagccggggcccacctccg
acagacccgtatggccgacctccaccctatgacagaggtgactatgggccacctggaagg
cgtttcactggaaataacatgtccataagagaaaaattacatattccattctatgggagg
cacacgaaaaataatactcaaaactcagggagagaaatggatgctgcaaggacacctcta
agtgaagcagaatttgaagaaatcatgaatagaaatagggcgatctcaagcagtgccatt
tcgagagctgtatcagatgccagtgctggggactatggaagtgctatagagaccttggta
actgcaatttccttaatcaaacagtccaaagtatctgcggatgatcgctgtaaagtgctc
attagctctcttcaggactgccttcatggaattgagtccaagtcttatggttctggatcc
agaagacgtgagcgatccagagagagggaccacagtaggtcacgagaaaaaagtaggcgc
cacaaatcacgtagtagagatcgtcatgatgactattatcgggaaagaagccgtgaaaga
gagaggcatcgtgatcgtgacagagatcgcgacagagaacgagacagagagagagaatat
cgtcatcgttaa
DBGET
integrated database retrieval system
