Caloenas nicobarica (Nicobar pigeon): 135989978
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Entry
135989978 CDS
T11056
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnic03400
]
135989978 (PMS1)
DNA repair and recombination proteins [BR:
cnic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
135989978 (PMS1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
HMG_WDHD1
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
135989978
NCBI-ProteinID:
XP_065493197
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All DBs
Position
6:complement(14727928..14784842)
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AA seq
980 aa
AA seq
DB search
MEPADRPVGRAGLSWARAGEGPGRATRTAHSSGGNGGVADAQLCSLFNSTMKQLPAETIR
LISSSQVITSVVSVVKELIENALDANATIIDIKLENYGLNKIEVRDNGNGIKVADVPVMA
IKHYTSKISSSEDLERLTTYGFRGEALGAICSVSEVLITTMTADDDYSIQYTLDSSGHIT
SKRPSHLGQGTTVTVLQLFNNFPVRKQFYSTNKKCKEELKKVQDLLIAYGIIKPDLRITL
SHNKAVIWQKIRVSNHKMAFMSVLGTAVMGSMVPFQHCCKDPEINLSGFLPKAESDSSLT
SLSSSERSFVFINNRPVQQKEILKLIRQYYNMVTQKDSSRLYPVFFLNITVPASAVDVNI
TPDKTQVLLHYKESVLLAVENVLKSLYGPLPATVPGESNKTDVTSEDMFVHRTEQTDVVV
NETGPSGNDDLHAHTSFPSFGSNVQNCQAGKNTEICLNHQTFCDDNVHSHLDKKEVSESN
ALPDNSLNLLCEEEQNRQNMTEIQSKGVTGDPKSKKTDEHHLSSGNVDKTEKNEEALGPQ
DLPEISADSWSMGSGFKSCLGGNLKHIKILVPEVEGTINKQNECVSEQSNDLQISNQSIK
KRNVISEKFGRVTAYDLINGKPIRKARTPMGFFTEERRPQLIDDNPSTRMEDILLMIGEQ
WKNLNQEEKRQYEIKASKDQERYSRDVEKAMRQTAHRSTKEAEKKKSKLKTSPSNQQKLS
KMFNVQVEKKCKPELPVKIVTVPFSLSSCKCQIQRQEKNYSDEHELFLIRRQSFPDVWML
ATEKKLMLLNPYRLEEALLCKRLLMNHKLPVEKLDTPIVLTDSLLGGSQYMAALYKMQKD
SRSFSGLGYLSDPRLVANGFQIKVIEGAESHLEIEGIANCLPYYGISDLKEILKAIVDGN
AKEVYECRPLKVINYLEGEAVRLARQLPLHFSKEDVQNKIYRMMQQLGKENKGCVHGRPF
CCHLADIPEDDKHNSMEIIE
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggagcctgccgaccggcccgtgggcagggctgggctgagctgggcccgggcaggggag
gggccgggccgagccacccgcaccgcccacagcagcggcgggaacggcggcgtcgcggac
gcgcagctttgctcactctttaattccactatgaaacagctgccggcagaaactattcgt
ctcatttcaagttctcaggtgatcacatcagttgtcagcgtggtgaaggagctgatagaa
aatgccttggatgcaaatgccacaattattgatattaaactggagaattatgggcttaac
aaaatagaagtaagagacaatggcaatggaatcaaggttgctgatgtcccagttatggca
attaaacactacacctcaaaaataagctcttctgaggaccttgaaaggttaacaacatac
gggttccgtggggaggctttgggagcaatttgctccgtatctgaggttttaatcacaaca
atgacagctgatgatgattacagcattcagtatactttggacagcagtgggcatataact
tctaaaaggccttcccatcttgggcaaggtactacggtaacggtcctacagttgtttaat
aattttcctgtaagaaagcagttttactcaacaaataaaaaatgtaaggaagaactgaaa
aaagtccaagatctgctgatagcatatggtatcataaaaccggacctgaggataacctta
tcacataataaggcagttatttggcagaagatcagggtgtcaaatcacaaaatggccttt
atgtcagttctgggaacagccgttatgggcagtatggtaccttttcaacattgctgcaaa
gatcctgagataaatctttctggatttctcccaaaagctgagtcagacagttctttgaca
agcctttcaagttcagaaaggagttttgtttttataaataatcgtccagttcagcagaag
gaaatactcaagttaattcgacagtactacaatatggtgacacaaaaggactcttctcgt
ttgtaccctgttttctttttgaatattactgtacctgcctctgctgtggatgtgaatata
acacctgataaaactcaagttttactgcattataaggaatctgtcttacttgctgttgaa
aatgtgttgaagtcactgtatgggccactacctgctacagtccctggtgaaagtaataaa
acagatgttacctctgaagacatgtttgttcatagaacagaacaaacagatgtggttgtt
aatgaaacgggaccatctggaaacgatgatctgcacgctcacacttcattcccttcattc
ggcagcaatgtgcaaaactgtcaagcaggaaaaaacacagagatctgcttaaatcatcag
acattttgtgatgataatgtacatagtcacctggacaaaaaagaggtttctgagagtaat
gcccttccagacaattccttaaatttattgtgtgaggaggaacagaatagacagaatatg
actgaaattcaaagtaagggtgttactggggaccccaagtctaaaaaaactgatgagcat
catttgagttctggtaatgttgacaaaacagaaaaaaatgaggaagcattaggccctcaa
gacttacctgaaatctctgctgatagttggagtatgggaagtggatttaaaagctgttta
ggaggcaacctgaaacatattaagattttggttcctgaggttgaagggacaattaataag
caaaatgaatgtgtcagtgaacaaagcaatgatctgcaaatctcaaatcaaagcataaag
aaaagaaatgtgataagtgagaaatttggacgtgtgacagcttatgacttaattaatggc
aaaccaataaggaaagcaaggactccaatgggatttttcactgaagaacgtcgtccacaa
ttgatagatgataatccaagcaccagaatggaggacatcctgctgatgattggagagcag
tggaagaatttgaatcaagaggaaaaaaggcaatatgaaataaaagcttccaaagaccag
gaacggtacagcagagatgttgagaaagctatgaggcagacagcacaccgatcaacaaag
gaggcagaaaaaaagaaatccaagctgaagacttccccatctaaccagcagaagcttagc
aagatgtttaatgttcaagttgaaaagaagtgtaaacctgaactgcctgtgaaaattgtg
acagtgcctttttctctgagttcctgtaaatgtcagattcagagacaagagaaaaattat
tcagatgaacatgagcttttcctgatccgtcgtcagagttttcctgatgtctggatgctt
gctactgaaaaaaagctgatgttgctgaatccatatagattggaagaagccctgctatgt
aaaagattactgatgaatcataagcttccagtagagaaactggacacaccaattgtgtta
acggacagtcttcttggtggatctcagtatatggctgctctttataagatgcagaaggat
tcccggagtttcagtggattgggttatttgtcagatccaaggcttgtagcaaatggtttc
cagataaaagtgatagaaggtgcagaaagccatctggaaatagaagggatagctaattgt
ctgccctattatggtatttctgatttgaaagaaattctgaaggcaatagttgatggaaat
gcaaaggaagtatatgaatgtaggcctctcaaagtgataaattacttggagggagaagca
gtgcgtttagctcggcagctgcccttacatttttcaaaagaagatgtacaaaacaaaatt
tacaggatgatgcaacagcttggaaaggaaaataaaggctgtgttcatggtcgtcctttt
tgttgtcacttagcagatattccagaagatgacaagcacaactccatggaaattattgag
taa
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