Caloenas nicobarica (Nicobar pigeon): 135990009
Help
Entry
135990009 CDS
T11056
Symbol
HDAC4
Name
(RefSeq) histone deacetylase 4 isoform X1
KO
K11406
histone deacetylase 4/5 [EC:
3.5.1.98
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
135990009 (HDAC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cnic03036
]
135990009 (HDAC4)
Enzymes [BR:
cnic01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
135990009 (HDAC4)
Chromosome and associated proteins [BR:
cnic03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
135990009 (HDAC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
HDAC4_Gln
Motif
Other DBs
NCBI-GeneID:
135990009
NCBI-ProteinID:
XP_065493320
LinkDB
All DBs
Position
6:6591821..6822904
Genome browser
AA seq
1089 aa
AA seq
DB search
MSSQSHPDGLSGRDQPVELLNPPRVNHMPSSVDVTTALPLQVAPTSVPMDLRLDHQFPMP
VTEPTLREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLA
MKHQQELLEHQRKLEQHRQEQELEKQHREQKLQQLKNKEKGKESAVASTEVKMKLQEFVL
NKKKALAHRNLNHCISSDPRFWYGKTQHSSLDQSSPPQSGVSGTYNHPVLGMYDSKDDFP
LRKTASEPNLKLRSRLKQKVAERRSSPLLRRKDGPVVTALKKRPLDVTGMSDSACNSAPG
SGPSSPNNSSNNISAENGIAGSVTSIQAETSLAHRLVNREGSVTQLPLYTSPSLPNITLG
LPATGPSSGGSAQQDAERLTIPTLQQRISLFPGTHLTPYLSTTTLERDGGTAHNPLLQHM
VLLEQPTAQTPLVTDWYLSGLPLHAQSLVGGERVSPSIHKLRQHRPLGRTQSAPLPQNAQ
ALQQLVIQQQHQQFLEKHKQQFQQQQLHINKIISKPNEPARQHESHPEETEEELREHQAL
LEEPYSDRVASQKEAPGLANVVQVKQEPIESDEEEAEPQQELEAGQRQAEQELLFRQQAL
LLEQQRIHQLRNYQASLEAAGMPVSFGGHRPLSRAQSSPASATFPMSVQEPPTKPRFTTG
LVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVH
SEAHTLLYGTNPLNRQKLDSKKLLGSLTSMFVRLPCGGVGVDSDTIWNEVHSSGAARLAV
GCVIELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLLQQRLNVSKIL
IVDWDVHHGNGTQQAFYNDPNVLYISLHRYDDGNFFPGSGAPDEVGTGAGVGFNVNMAFT
GGLDPPMGDTEYLTAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGY
LTKQLMGLAGGRVVLALEGGHDLTAICDASEACVSALLGNELEPLPEKVFQQRANANAVH
SMEKVIEIHSKYWHSLQRYSSTVGYSLVEAQKCENEEAETVTAMASLSVGVKAAEKRPDD
EPMEEEPPL
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagctcccaaagccatccagatgggctttctggcagagaccagccagtagagctgttg
aatccacctagagtgaaccacatgcctagctctgttgatgtgaccacagcactgcccttg
caagttgcgccgacttcggtcccgatggacctgcgcttggaccaccagtttcccatgccc
gtgacggagccaacgctgcgggagcagcagctgcagcaggagctcctggcgctgaagcag
aagcagcagatccagaggcagatcctcatcgccgagttccagcggcagcacgagcagctt
tcccggcagcacgaggctcagctgcacgagcacatcaaacagcaacaggagatgctggcg
atgaagcatcagcaggagctgttggagcaccagaggaagctggagcagcaccgacaggag
caggagctggagaagcagcaccgagagcagaaactgcagcagctaaaaaacaaagagaaa
ggaaaagagagtgcagtggcaagcacagaagtaaagatgaaattacaagaatttgtctta
aataagaagaaggcattggcacaccggaatctcaaccactgtatatccagtgaccctcgc
ttctggtatgggaagacacagcacagctctctggaccagagctccccaccccaaagtggc
gtatccggcacctacaatcaccctgtactggggatgtacgattccaaagatgacttcccg
ctcagaaaaacagcgtctgaacccaacctgaagttacgatccagactaaagcaaaaagtt
gctgaaagacggagcagccccctcttgcgcagaaaagatggtccggtggttactgctctt
aagaagcgcccgctggatgtcacaggtatgtcggactctgcatgcaacagtgctcctgga
tctggtcccagctctccaaacaacagctccaataacataagcgccgagaatggaattgca
ggatcagtcacgagtattcaagcagagaccagcctggctcacagacttgtgaatcgtgag
ggctcggtaacgcagcttccgctgtacacgtctccgtctttgcccaacatcacgctagga
ctgcctgcaactggcccttccagcggaggctcagcacagcaggatgcagagagactgact
atcccaaccttacagcagcggatctctttgtttcctggcactcacctcactccctacttg
agcactacaacgttggaaagagatgggggaactgcacataaccctcttctgcaacacatg
gtcttactggagcagccaactgcacaaacacccttagtcacagactggtatctttcagga
ctgcccctccatgcacagtctctggttggtggagaacgggtctccccttcaatacacaaa
ctccggcagcatcgcccgctggggcgcacgcagtctgctccccttccccagaacgcccag
gccctccagcagttagtgatccagcagcagcaccagcagttcttggagaaacacaaacag
caattccagcaacagcaactgcacatcaacaagattatatcaaaacccaacgaaccagct
cgccagcatgaaagccaccctgaggagacagaagaagagttacgggaacaccaagccctt
ttggaggagccatacagcgacagagtcgcgagccaaaaggaggccccagggttggccaat
gtggtgcaagtgaagcaagaacccatcgagagcgatgaggaggaagcggagccgcagcag
gagctggaggctgggcagaggcaggctgagcaggagctgctcttccgtcagcaagccctt
ctgttggagcagcaacgtatccaccagctgagaaactaccaggcgtcgctggaagcagcc
ggcatgcccgtctctttcggagggcatcggcctctgtcccgtgcacagtcctcgcccgcc
tcggccaccttcccgatgtccgtacaggagccacccactaagccaaggttcacaacaggc
cttgtatatgacaccttgatgctgaaacaccagtgtacctgtggaaacacaaacagccac
ccagagcacgcagggaggatccagagcatctggtcccggctccaggagacgggtctccgt
ggcaagtgtgagtgcattcgtggaagaaaagcaactctagaagagctgcagacagttcac
tcagaagcccatacgctgctgtacggcacaaaccctctgaacagacagaaactggacagc
aagaaacttctaggttctctaacgtcgatgtttgtcaggcttccttgcggtggtgtcggg
gttgacagtgacacaatttggaatgaagttcactcatctggtgctgctcggctggccgtg
ggctgtgtcattgagctcgttttcaaagtggccacaggagaactgaagaatggatttgct
gttgttcggcctccaggtcaccacgcagaagagagcacacccatgggtttctgctatttt
aactctgtggcaatcgcagccaagctgctccagcaaagactgaatgttagcaaaatccta
atagtggactgggatgttcaccatgggaatggtactcagcaagctttctacaacgatcct
aatgttctttatatttcactacatcgctatgatgatgggaacttctttccaggcagtggt
gctcctgatgaggttggcacaggagcaggagttggtttcaatgttaacatggcctttact
ggtggccttgatccaccgatgggagacacagaatatttaactgctttcagaacggtagta
atgcccattgccaacgaatttgccccagatgttgtgctggtgtcatctggtttcgatgcg
gtggaaggccatcccacacctctcggaggatataatctatcagcaaaatgcttcgggtac
ctgacgaagcagctgatgggcctggccgggggtcgcgtcgtcctggctctggaaggaggc
cacgacctgacagccatttgtgatgcctcggaagcgtgtgtttctgctttgctggggaac
gagcttgagcctcttccagaaaaggttttccagcagagagcaaatgctaatgcggtgcat
tcaatggagaaagtaatcgagatacacagcaagtattggcattcactccagcgttactcc
tccacggtggggtactccctggttgaggcgcagaagtgcgagaatgaggaggcggagacg
gtaacggccatggcatctctgtcagtgggcgtgaaggcagctgagaagagacccgatgat
gaacccatggaagaggaacctcccctgtag
DBGET
integrated database retrieval system
