Caloenas nicobarica (Nicobar pigeon): 135990397
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Entry
135990397 CDS
T11056
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
135990397 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135990397 (BARD1)
04121 Ubiquitin system [BR:
cnic04121
]
135990397 (BARD1)
03036 Chromosome and associated proteins [BR:
cnic03036
]
135990397 (BARD1)
03400 DNA repair and recombination proteins [BR:
cnic03400
]
135990397 (BARD1)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
135990397 (BARD1)
Ubiquitin system [BR:
cnic04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
135990397 (BARD1)
Chromosome and associated proteins [BR:
cnic03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
135990397 (BARD1)
DNA repair and recombination proteins [BR:
cnic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
135990397 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_4
Ank_2
Ank_5
Ank_3
BRCT
BRCT_2
Ank_KRIT1
zf-RING_5
ANK_LRRK2
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_4
zf-rbx1
NIBRIN_BRCT_II
zf-RING_UBOX
PTCB-BRCT
Siva
Motif
Other DBs
NCBI-GeneID:
135990397
NCBI-ProteinID:
XP_065494124
LinkDB
All DBs
Position
6:9230760..9272817
Genome browser
AA seq
788 aa
AA seq
DB search
MREALRGRSGNRPAPGGHTLAAPPMALPWARTRAALGRLERALTCSRCAGVLRQPVSLGR
CEHVFCLSCVGDCVGTECPVCHMPAWVQDTQINRQLDNMIQLCSKLQQLLGSDTSDSTED
KSTPTDSDFEKKNKKEQIKMWFSPRSRKVRYILNKSQPETKSNDLCQDTSSIYDFLPSPP
HEKPSKQTKKPTQRQSKKMKKKRLADINKAWSLEQPKQKGGVGEKTLKEKCVTICSQPVV
LCTSEPNSPEETLQQESVEEADSSKNREKREISPQVKLTEKKDNSGVACPAQVTREKKSA
TGPSPSIENEATPLKRGREESRLPVSLQPKRPRRTERSIIGKPDSQADGLEELPQGCPIS
PAAEHKTPVQISSAVSKLPDTVRKTRSSAALQAINSPSLSASPSTPSTSKTCNQVGIPHS
PSVLKSPGGNTIARRNYKGETLLHVASIKGDVAAVEQLLKNGADPNVKDNAGWTPLHEAC
NHGHKEVVELLLQYKALVNTTGYQNDSPLHDAARNGHVSIVELLLLHGASRDAVNIFGLR
PVDYAESEKMKSVLTLPVKNESFSLNQPSEALSPSQPRDGPLGILGSSLSSEQQKLLNKL
ATVLKARRCTEFNSRVTHLVIPDVPMPSTIKCMMAVLTGCWVLKFEWVQACLQTTVREQE
KKYEIQGGPRRGRLNREQLLPKLFDGCYFYFLGSFNHHQKSDLVELVKAAGGQILVRQPK
PDSDVTQTINTVAYHAESTSDQRFCTQYVIYDASSKFKPEKIRQGKVWMAPSSWLIDCVM
SFQLLPVK
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgcgggaggcgctgcgcggccgctcgggcaaccggccggccccgggcggtcacaccctc
gccgcaccccccatggcgctgccctgggcccgcacccgcgccgcgctggggcggctggag
agagcgctgacttgctcccgctgcgccggcgtcctgcggcagcccgtgtccctggggcgg
tgcgagcacgtcttctgcctatcttgcgtaggcgattgtgttggcacagaatgcccagtg
tgccacatgccagcctgggtgcaagatacgcagataaaccggcaactcgataacatgatc
cagctttgcagcaaattgcagcagctactgggatcagacacctcagattcaacagaagat
aagtcgacaccaactgactcagactttgaaaaaaagaataagaaggaacagataaaaatg
tggttcagcccaagaagtaggaaggttcggtacatcctgaacaagagtcaacctgagact
aaaagcaatgacctttgtcaagacacatcttcaatttatgatttcttgccttcccctcct
catgaaaagccctccaagcagacaaaaaagccaacacagagacagagtaagaagatgaag
aagaaacgtttagcagacattaacaaagcgtggagcttagagcagcctaagcagaaaggg
ggagtaggggagaagactctcaaggaaaagtgtgtgaccatctgcagtcaaccagtggtc
ctgtgcacttcagaaccaaacagccctgaagagacacttcagcaggagtctgtagaggaa
gctgactccagcaaaaatagagaaaagagggaaatatcgccacaggtaaaattgacagag
aagaaagacaacagtggggttgcatgccctgcgcaagtcaccagagaaaaaaaaagtgct
acagggccatcaccgtcaatagaaaatgaagctacacctttaaaacgtggaagggaggaa
tctagacttccagtttctttacagcctaagagaccaagaagaactgagaggagcattatt
gggaagccagacagtcaggcagatggtttagaggagttacctcagggctgccccatctcc
ccagcagctgaacacaagacaccagttcagatttcctccgctgtgtcaaaactccctgac
actgtaaggaagacaagaagctctgcagccttgcaagcaataaatagtccttcgctttca
gcatcgccctctaccccatctacttctaagacttgtaatcaagtaggaataccccacagt
ccttctgtgttgaagtcccctggtgggaacacaattgccagaagaaattacaaaggagag
actttgctccacgttgcttccatcaagggtgacgtagcagctgttgaacagctgctgaaa
aatggggcagatcccaatgtcaaagataatgctggctggacaccactgcacgaggcatgt
aatcatgggcacaaagaagtggtggagctgttgctacaatacaaagcgttggtgaatact
acggggtaccagaacgactcgccacttcatgatgctgccaggaatgggcacgtgagcatt
gttgagctgctgcttttgcatggtgcctcccgtgatgcagttaatatatttggtctgcgg
cctgtggactatgcggaaagtgaaaagatgaagtctgtgctaacgttaccagtgaagaat
gaatcattttcacttaaccaaccctctgaggcactgagccccagccagccaagagatgga
ccccttggtatactgggaagcagtcttagttcggagcaacagaaattactgaacaaactg
gcaacagttctgaaggctcgaaggtgtactgaatttaacagcagagtaactcatctcgtt
atccctgatgttccaatgccaagtaccatcaaatgtatgatggctgttctgactggatgc
tgggtcctcaagtttgaatgggtccaagcctgtctccaaaccacagttcgagagcaagaa
aagaagtatgaaatccaaggtggcccacgaagaggccggctcaacagagagcagctgctg
cctaagttgtttgatggatgctacttctactttttgggatctttcaaccatcaccagaag
agtgatcttgtggagctggtcaaagcagcaggaggacaaattctggttaggcagccaaaa
ccagacagcgatgtgacacaaaccatcaacacagtggcctatcatgcagaatctacttct
gaccagcgattttgcactcagtatgtaatctatgatgcgtcttctaaattcaagccagag
aaaattcgtcagggcaaagtctggatggccccttccagctggctgatagactgtgtgatg
tcctttcagctcctgcctgtaaagtga
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