Caloenas nicobarica (Nicobar pigeon): 135990623
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Entry
135990623 CDS
T11056
Name
(RefSeq) collagen alpha-1(XIII) chain-like isoform X1
KO
K16617
collagen type XIII alpha
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cnic00536
]
135990623
Glycosaminoglycan binding proteins [BR:
cnic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135990623
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
135990623
NCBI-ProteinID:
XP_065494489
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All DBs
Position
7:35249952..35312402
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AA seq
677 aa
AA seq
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MGIPGRPGLKGQPGEKGAPGEAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGQK
GEMGAAGPRGQPGPPGQKGEKGQCAEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQGQAGI
QGPPGPPGPPGPIGPAGPEGTPGQPGPVGPPGRAGEPGKPGRDGKGLPGPPGPKGDPGVQ
GYPGRKGEVGEPGLPGAHGLPGATGPKGEKGDAGIKGERGMPGLPGRHGTKGAPGMATAG
MKGEPGTPGEKGDPGVPGRMGPPGLPGKRGQRGEKGRAGDPGLPGLPGMKGDKGNAENTL
VGTKGEPGPPGLPGPPGQKGEAGDIGWPGTAGPRGEKGERGSPGDQGPMGPRGPKGEPGK
DEMMDYDGNISEALQEIRTLALMGPPGLPGVAGPPGPPGQKGEIGLPGPPGHDGEKGPRG
KPGEMGPPGLPGRDGPPGIKGEPGHVGATGEKGEKGEPGQAGSPGLDGPTGEKGERGDQG
MPGPSGLPGPIGLPGLTGEKGEPGERGNKGNPGESIPGPPGPQGPPGPPGLQGLPGPKGE
AGIDGMKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGTPGPSGVSGPAGPKGERGSKGD
PGVVGPMGPAGLPGLQGLPGDKGVRGERGKKGSRGSKGDKGDQGAPGLDAPCPLGEDGLP
VQGCWNKGQTPWLIAKK
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggggattcctgggcggccgggactaaaagggcaacctggagagaagggtgctccagga
gaagcgggcatgtctatcattgggccccgcggtccacccggacagcctggaacaagaggt
tttcctggattcccaggccctattggcttggacggtaaaccgggccatcctggacagaag
ggagagatgggtgctgcaggtcccaggggacaacctggacccccaggacaaaaaggagaa
aagggtcagtgtgcagagtacccgcacaggctgttgcctctcctcaattccgtgcggctg
gctccacctccggtcataaagagacgcactttccagggtgaacaaggacaagcaggaatc
caaggtcccccggggccccctggcccaccagggcccattggaccagcaggacccgaggga
accccaggacagccggggccagttgggccacctggcagagcgggagaacctgggaagcct
ggcagagatggaaagggcttacctgggcctcctggaccaaagggagaccctggggttcag
ggataccccggcagaaagggtgaggtgggtgagccgggcctgcctggtgcacatggcctc
cctggagctactggccccaagggcgaaaaaggggacgctggcataaagggggagagaggc
atgccagggctgccaggaagacatggcactaagggtgctcctgggatggcgactgcaggg
atgaagggcgagcccgggactccaggagaaaagggagatcctggagtcccagggaggatg
ggccccccaggtttgccagggaagagggggcagcggggtgagaagggacgagctggtgac
cctgggcttcctggactccctggtatgaagggagataagggaaatgctgagaacaccctg
gtgggaactaaaggagaacctggccctccaggtctgccagggccccctggacaaaaggga
gaagctggtgacattggctggcctggcactgcagggccacggggagaaaagggggaacgt
ggttcaccaggagaccaaggacccatggggccaaggggccccaaaggagagcctgggaag
gatgagatgatggactacgatggtaacatcagcgaggctctccaggaaataagaactttg
gccttgatgggacctccaggacttccaggtgtggctggacctccagggccaccaggacag
aagggtgaaattggcttgccaggtcctccaggccacgatggagaaaagggaccacgtggc
aaacctggagaaatgggtcctcccggactgccaggaagggatggaccacctggaataaag
ggagagccaggccatgtcggggccacaggagaaaagggcgaaaaaggagagccaggacaa
gccggctcaccgggtcttgatggccccaccggagagaaaggcgagcgaggtgaccaaggg
atgccaggaccgtcaggattgccaggtcccattggacttccaggattgacaggagagaag
ggcgagcctggggagcgtggaaacaaaggaaatccgggagaatcgatacctggtccccct
ggaccccaaggcccaccaggacctccaggtcttcagggcctcccaggaccgaagggggaa
gcagggattgatggaatgaaaggagagaagggtgcccagggtgaaaaaggagacagaggg
ccactgggattacccggtgcttcaggtttagacggcaggcctggaccaccgggtactcca
ggaccaagtggggtttcaggaccagcaggaccaaaaggagaaaggggcagtaaaggagat
cctggagttgtaggaccaatggggccagcagggcttcctggtttacaaggtctacctggt
gacaaaggagtccggggggagaggggcaagaaaggctctagagggtctaaaggggataag
ggagaccaaggagcgcctggattagatgcaccctgtccgttgggggaagatggccttcca
gttcaaggctgctggaataagggtcagactccttggctgatagccaaaaagtga
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