Caloenas nicobarica (Nicobar pigeon): 135991038
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Entry
135991038 CDS
T11056
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135991038 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnic03021
]
135991038 (TAF5)
03036 Chromosome and associated proteins [BR:
cnic03036
]
135991038 (TAF5)
Transcription machinery [BR:
cnic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
135991038 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
135991038 (TAF5)
Chromosome and associated proteins [BR:
cnic03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
135991038 (TAF5)
STAGA complex
135991038 (TAF5)
TFTC complex
135991038 (TAF5)
SAGA complex
135991038 (TAF5)
SLIK complex
135991038 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_Nup120_160
PEP5_VPS11_N
CDK5RAP3
WD40_like
RAB3GAP2_N
eIF2A
VID27
Motif
Other DBs
NCBI-GeneID:
135991038
NCBI-ProteinID:
XP_065495359
LinkDB
All DBs
Position
7:complement(13768506..13780720)
Genome browser
AA seq
788 aa
AA seq
DB search
MAALPEEPAEVAAVKPDPDAGTPPQPPAAPPAAVVAAPAAPPAAAAEGEVAGSGGDAAPA
KPAAPGPAASPTALDRQTLVAVLQFLRRSNLRESEEILRREARLLGDDLGAAALSPAGAG
LLGAPGGDADAAGGEALLSRVTTAAATAIGGSAATVASSSPGVAAVTAVPPGKVGGGVAV
EDQPDVSAVLSAYNQQGDPTLYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELV
YNQHESEAKSFFERFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRD
SYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKV
FFGLLKEPEFDVPLDDEDEEGENEEGKPKKKKPKKDSGGSKSKKQDPNAPPQNRIPLPEL
KDSDKLDKVMNMKEAARRVRLGPECLPSICFYTFLNAYQGLTAVDITDDSSMIVGGFADS
TVRVWSVTPKKLRSVKTAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGTSFS
PDRNYLLSCSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLW
ATDHYQPLRIFAGHLADVTCTRFHPNSNYIATGSADRTVRLWDVLNGNCVRIFTGHKGPI
HSLAFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVYALRFSRDGEILASGSMD
NTVRLWDAVKAFEDLETDDFTTATGHINLPENSQDLLLGTYMTKSTPVIHLHFTRRNLLL
AAGAYSSQ
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctacctgaggagccggcggaggtggcggcggtaaagccggaccctgacgcg
gggacgccgccgcaacctcccgctgctcctccagccgccgtagtcgccgctcccgccgct
cctccggctgcggcggcggagggggaggtggcggggagcggtggggatgcggctcccgct
aagcctgcggcgccgggcccggccgcctccccgacggcgctggaccggcagacgcttgtg
gccgtgctgcagttcctgcggcgcagcaacctccgcgagtccgaagagatcctgcgccgc
gaagcccgcctgctcggcgacgacctcggcgccgctgccctcagccccgccggcgccggg
ctgctgggagccccgggcggcgatgcggacgctgccggcggcgaggcgctgctcagccgg
gtcaccaccgctgccgccaccgccataggaggcagcgccgccactgtcgcctcttccagc
cccggggtggcggcggtgaccgcggtgccgccggggaaagttggaggcggtgttgctgtg
gaagaccagccagatgtgagtgcagtattgtcagcctacaatcaacagggagacccgacg
ctgtacgaggaatactacagtggattaaaacacttcattgagtgttccctggattgtcat
cgagcagaattgtctcagctgttttatcctctctttgtgcacatgtatttggaattggtc
tacaatcaacatgagagtgaagcaaagtctttttttgaaagatttcatggggatcaggag
tgctattaccaggatgacctgcgtgtattatcgagcttaaccaaaaaagaacatatgaaa
ggtaacgagaccatgctggatttccgaacaagcaagtttgtgctgcgtatttcccgtgac
tcttatcaactcttgaagaggcatcttcaggaaaagcagaacaatcagatctggaacatt
gttcaggaacatctttacattgatatctttgatggaatgcctcgcagcaaacaacagata
gatgctatggttggaagcttggctggggaggcaaaacgagaggctaataaagcaaaggtt
ttctttggcttattgaaagaaccagagtttgatgtgccattggatgatgaagatgaagaa
ggagaaaatgaggaaggaaagccaaagaagaaaaaacctaaaaaagatagtggagggtcc
aaaagtaaaaaacaagaccctaatgctcctccccaaaataggattcctctgcctgaactg
aaagactctgacaagctggataaagtaatgaatatgaaagaagctgcaaggcgtgtgcgt
cttggcccagagtgcctgccctccatctgtttctacacgttccttaatgcttaccagggt
ctgactgcagtggatattacagatgactcaagcatgattgtaggaggctttgctgactct
actgtcagagtgtggtctgtgactccgaaaaagctgcgtagtgtgaaaacagcagcagac
ctcagtctcattgacaaagaatcagacgatgtcttggagaggatcatggatgagaaaaca
gcaagtgagttgaagattttatatggtcacagtggacctgtctatggcaccagcttcagt
cctgataggaactatctgttgtcctgttctgaggatggcactgtcagattgtggagtctc
caaacattcacatgtttggtgggatataaaggacacaactatccagtatgggatacacag
ttctctccttatggttattactttgtgtcagggggacacgacagagtggctcgcctgtgg
gcaacagatcactaccagcctttacggatatttgctggccatcttgctgatgtgacgtgt
acccgattccatccaaactccaactatattgctacaggctctgcagacaggactgtacgg
ctctgggatgttttgaatgggaattgtgtaagaatattcactggacataagggaccaatt
cattcattggcattttctcctaatggacgatttctggctactggagcaacagatggcaga
gttctgctgtgggatattggacatggcttgatggttggagaattaaaaggtcacactgac
actgtctacgcgctcagattcagtagagatggggaaattttagcatcaggttcaatggat
aacacagttcgtctgtgggatgctgtgaaagcattcgaagatttagaaactgatgacttt
accacagccactggacatataaacttgcctgaaaactctcaggacttgttactaggtaca
tacatgaccaagtcaaccccggtcatacacctccatttcacacgcagaaacttgctgctg
gcggcaggagcctacagctcacagtga
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integrated database retrieval system
