Caloenas nicobarica (Nicobar pigeon): 135991294
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Entry
135991294 CDS
T11056
Symbol
TRPC1
Name
(RefSeq) short transient receptor potential channel 1 isoform X1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cnic04040
]
135991294 (TRPC1)
Ion channels [BR:
cnic04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
135991294 (TRPC1)
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
Dsc3_C
MTR4-like_stalk
LHD_TRPY1
RIN1
Motif
Other DBs
NCBI-GeneID:
135991294
NCBI-ProteinID:
XP_065495842
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Position
8:13498906..13522767
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AA seq
785 aa
AA seq
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MAALYQSADPSASASPNKLLALKDVRQVKEETTLDEKLFLLACDKVACAGDYYMVKKLLE
ENSSGEMNINCVDVLGRNAVTITIENENLDILQLLLDYGCQSSDALLVAIDSEVVGAVDI
LLNHRPKRSSRPTIVKLMERIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQDISLPKP
HAVGCECTLCTAKNKKDSLRHSRFRLDIYRCLASPALIMLTEEDPILRAFELSADLKELS
LVEVEFRNDYEELAQQCKTFAKDLLAQARNSRELEVILNHTSSDEHVDKRGLLEERMNLS
RLKLAIKYNQKEFVAQSNCQQFLNTVWFGQMAGYRRKHTCKKILTVLMVGIFWPVLSLCY
LLAPKSRVGRIIHTPFMKFIIHGASYFTFLLLLNLYSLVYNENKKNTMGPALERIDYLLI
IWLIGMVWSDVKRLWYDGLEDFLEESRNQLSFVMNSLYLATFALKVVAHNKFHDYAERKD
WDAFHPTLVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQDFGKFLGMFLLVL
FSFTIGLTQLYDKGFTVNEEKDCAGIFCEQQSNDTFHSFIGTCFALFWYIFSLAHVAIFV
TRFSYGEELQSFVGAVIVGTYNVVVVIVLTKLLVAMLHKSFQLIANHEDKEWKFARAKLW
LSYFDDKCTLPPPFNVIPSPKTICYLFNSLSKWICSHTSSGKVKRQNSLKEWRNLKQKRD
ENYQKVMCCLVHRYLTSMRQKMQSTDQATVENLNELRQDLSKFRNEMRDLLGFRTSKYAM
FYPRN
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggccgccctgtaccagagcgcggacccgtccgcctcggcctcgccgaacaagctgctg
gcgctgaaggacgtgcggcaggtgaaggaggagactacgctggacgagaagctcttcctg
ctggcctgcgacaaagttgcttgtgcaggtgactattatatggttaagaaactcttagaa
gaaaacagctcaggcgaaatgaacataaattgtgtggatgtgcttggacgaaatgccgtt
accataaccattgaaaatgaaaacttggacatactacagctgcttttggattatggctgc
cagtcatcggacgcacttttggtggctattgactcagaagtggtgggagctgtcgacatt
ctactgaatcaccgaccaaaaagatcctccagaccaaccattgtaaaactaatggaacgc
attcagaacccagagtactcaacgaccatggatgtggcacctgtcattttagccgctcat
cgtaacaactatgaaattctcaccatgctgttaaagcaagacatatcattacccaaacct
catgctgtaggttgtgaatgtacactgtgtactgcaaagaacaaaaaagatagtctgcga
cattccaggtttcgtcttgacatttatcggtgtttggccagtcctgctttaatcatgttg
acagaggaggatccgatcctgcgagcttttgagcttagtgcagacttgaaagaattaagc
cttgttgaggttgaattcagaaatgattatgaggagctagctcaacagtgcaaaaccttt
gctaaagatttgcttgcccaagcacggaattcacgggagctggaagttattctgaatcac
acatctagcgatgaacatgtagacaagcgaggattgttggaagagaggatgaacttaagc
cgcttaaaacttgcaatcaagtataatcaaaaagagtttgtcgctcaatctaactgccag
cagtttctgaacacagtatggtttggacagatggcaggctatcgacgcaagcacacatgc
aagaaaattttgactgttttgatggtgggcattttctggccagttctgtccctgtgttac
ttgttagcccctaaatctcgagtaggtcgaataattcacactccttttatgaagtttatt
attcatggagcttcatatttcacatttctgttattacttaatttgtactcccttgtctac
aatgagaataagaagaatacaatgggaccagcccttgagagaatagactatcttctgata
atatggctgataggaatggtgtggtcggatgttaaaagactctggtatgatggtttagaa
gactttttagaagaatcccgtaatcagcttagttttgtcatgaattctctgtatttggca
acttttgctctcaaagtagttgcccataacaagtttcatgattatgccgaaaggaaggac
tgggatgcgttccatcctaccctggtggcagaaggtctttttgcttttgctaatgttctt
agttaccttcgtctgttcttcatgtacacaaccagctctattctgggaccactccagatt
tcaatgggacagatgctacaagattttggaaaatttctgggcatgtttcttcttgtcttg
ttctcgttcacaattggattgacacaactttatgataaaggatttactgtaaatgaagaa
aaagactgtgcggggattttctgtgaacaacagagcaatgacacattccattcgtttatt
ggcacatgttttgctctgttctggtacatattctccctggcacatgtagcaatctttgtc
acacgttttagctatggtgaagaattacagtcttttgtgggtgctgttattgttggtacc
tacaatgtggtggttgtgattgtattaactaaactccttgtggcaatgcttcataaaagt
ttccagctgatagcaaatcatgaagataaggaatggaagtttgctcgtgccaagctttgg
cttagctacttcgatgacaaatgcacgctacctccacctttcaatgtcattccctctccc
aagactatctgttatcttttcaacagtctcagtaaatggatctgttctcatacatcaagt
ggcaaagtgaaacgtcagaacagcctaaaggaatggagaaatctgaagcaaaagagagat
gagaattatcaaaaagtgatgtgttgcttagtccaccgttacttgacgtccatgagacag
aagatgcaaagcacggatcaggcaactgtggaaaacctgaatgaactacggcaagacttg
tcaaaattccgaaatgaaatgagagacctgcttggctttcgaacttctaaatatgctatg
ttttatccaagaaactaa
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