KEGG   Caloenas nicobarica (Nicobar pigeon): 135991525
Entry
135991525         CDS       T11056                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
cnic  Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03030  DNA replication
cnic03410  Base excision repair
cnic03420  Nucleotide excision repair
cnic03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cnic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    135991525 (RFC4)
   03410 Base excision repair
    135991525 (RFC4)
   03420 Nucleotide excision repair
    135991525 (RFC4)
   03430 Mismatch repair
    135991525 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cnic03032]
    135991525 (RFC4)
   03036 Chromosome and associated proteins [BR:cnic03036]
    135991525 (RFC4)
   03400 DNA repair and recombination proteins [BR:cnic03400]
    135991525 (RFC4)
DNA replication proteins [BR:cnic03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    135991525 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    135991525 (RFC4)
Chromosome and associated proteins [BR:cnic03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    135991525 (RFC4)
DNA repair and recombination proteins [BR:cnic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     135991525 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    135991525 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 AAA_16 AAA_30 AAA_22 AAA_11 DUF815 Mg_chelatase AAA_24 AAA_14 SLFN-g3_helicase AAA_28 RuvB_N TIP49_C AAA_19 AAA_5 DNAX_ATPase_lid ResIII AAA_7
Other DBs
NCBI-GeneID: 135991525
NCBI-ProteinID: XP_065496290
LinkDB
Position
8:20590472..20603523
AA seq 362 aa
MQAFLKGPSCISTKPPAAKEKGAAGSSGEGKRLKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVAEKEHVKISSEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITEKIVTEIAGVIPKETIDELLSVCQSGSFERLETLAKNLINEGYA
VAQLVNQLHDAVVECEDYSDKEKSAIVEKLAEVDKCLVDGADEYLQLMSLCALVMQQLTQ
NT
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggcctttctcaaaggcccgtcttgcatcagcaccaagccccccgccgccaaggag
aagggcgcagccgggagcagcggggagggcaagaggctcaaacccatcccctgggtggag
aaatatcgccccaaaaatgtggatgaagtcgcctttcaggatgaagttgttgctgtgctg
aaaaagtccctggaaggtgctgatcttcctaatctgttgttctatggcccacctgggact
ggaaagacttccactattttggcagctgctagagaactctttgggcctgaattattccgg
caaagagtccttgagttaaatgcttctgatgagcgtggaatacaagtgattcgggaaaaa
gtgaaggcttttgctcagctgactgcatctggaagccgttcagatggtaaagtttgtcct
ccttttaaaattgtaatcctggatgaagcagactcaatgacttcagcagcccaggcagcc
ttgagacgcacaatggaaaaagaatctaaaacaacacgtttttgtcttatttgtaactac
atcagcagaataattgaacctttaacatcgcgatgctccaaattccgcttcaagcctttg
tcagacaaaatccaacagcagaggttattggatgttgctgaaaaggaacatgtgaaaatc
agtagtgaggcagtatcttaccttgttaaagtgtcagaaggggacttaagaaaagcaatt
acttttcttcaaagtgccactcgcctcatgggcgggaaggagatcacagagaagatagtc
actgaaattgctggggtcatccctaaagagacaattgatgaactgctgtctgtctgccag
agtggttcatttgagagactggaaacactggcaaagaatctcatcaatgaaggatatgct
gttgctcagctggtaaaccagctgcacgatgctgttgttgagtgtgaagattacagtgac
aaagagaaatctgccatagtcgagaaacttgcggaagtagacaaatgcttggtggatggc
gctgatgagtacttgcagctgatgagtctctgtgccctggtgatgcagcagctgacacag
aacacttaa

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