Caloenas nicobarica (Nicobar pigeon): 135992242
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Entry
135992242 CDS
T11056
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cnic03036
]
135992242 (CHD9)
Chromosome and associated proteins [BR:
cnic03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
135992242 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Motif
Other DBs
NCBI-GeneID:
135992242
NCBI-ProteinID:
XP_065497337
LinkDB
All DBs
Position
9:5730661..5822358
Genome browser
AA seq
2892 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQDAQ
NQQKMSEFDQLSQYDSLKLHSVNQSFNSTADNVLSPHSQFSCSPIHPQNQSNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFHQGHSQSMQQNKSFVAHHDFALFQANEPQHQCASLRPPQ
SRSGAAQDALSQPKDFMEVNVSTSHRVSVNHPPAVSNPSTSQQPLSVQQFSQAASASIHF
CGNQEGNFDGQSPTITPCSVNNSQQFSSPYSYSNNHISPTSLLQPTTALSTSQQTHSISD
FTGSDAFTSQTGTKQETTEHMLNPSTPLNSNSYQMLHSAHPQGNFSSSKLSPVNISFPAS
AGSASQISHFTDPIESNGFTSLEDNLLHQVETHNEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTSHVLEHDLDHHITPQPVTPSPDLVRAQPPSQIHPWHSSVSHQHPQDRGRVTLQGQP
PSSKKTDGSGSYTKLQNTQVRAMSEKKQKKKADLESKQEKANRIISEAIAKAKERGERNI
PRVMSPENFPSVSAEGKEEKKGRRVKSKPKDKESKKPKTGSSSKIKEKTKIGKLIITLGK
KQKRKNESSDELSDAKQTPQRPLKDEDSQKRRSNRQVKRKKYAEEGEGKQSEEEAKVSVK
IKKNSAPLPAEQPLQLFVENPSEEDAAIVDKILASRVTKKEISAGMTVETEEFFVKYKNY
SYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSL
CEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPPN
AWKKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL
LAGIRGPFLIIAPLSTIANWEREFRTWTDLNVVVYHGSMISRQMIQQYEMYFRDSQGRIV
RGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL
LTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK
EDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKC
CNHPYLIKGAEEKILGEFKETYSPSAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLI
FSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGL
GINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLK
LGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQIL
QRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGRNSL
VIDTPRIRKQTRPFSATKDELAELSEVESEGDEKPKLRRPCDRSNGYGRTECFRVEKNLL
VYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKSFIWDLITPTEDG
QTRELQNHLGLSAPVPRGRKGKKVKTQASTFDIHKAEWLRKYNPEHLLQDEGYKKHIKHH
CNKVLLRVRMLYYLKQEVIGNECQKVFNGIDASEIDVWVPEPDHSEVPAEWWDAEADKSL
LIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKPAPAL
FKDDIEDDVSSPGDLVIADGDGQMMEGDKIYWPTQSALTTRLRRLITAYQRTSKNRQAQQ
IQPAFPVQTSMMQPPYEEAALNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPERGR
FDWTKFRAMARLHKKTDESLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITEERASR
TLYRIELLRKVREQALRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAAKHGVSRTD
YHILRDPELSFMSAQRNYNQNKVALSRTSTPLLHQYQMALSASPLTPQSRLSDAKVNAFE
DTKAKNENLKEDLQSSEEESMSTEETQTIMKSEPLSPRNGAPIQNADHKPSMRTETDRRM
VAARTEPLTPNPASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRSG
SSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSDEEETQKRAGGTPHIKAYDEESVA
SLSTTQDETQDSFQMNNGTPNSSYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWP
SARRSYDSNTVASFYTTKLLDSPGAAADYSEPSAPTPPLAGLKEEYDQSPQMSKVKKHVR
EKEFTVKINDEGGLKLTFQKQGLSQKRPFESEEGALGQQQYLARLRELQNASETSLVTFP
KSLPESGTSSHLTASANGVVADSQPAVKKRRGRRKNVEGVDVLFMNRNKQPNHVNPGINS
CPVAAGMNPVLPYAQSQGVLDAESPVPVINLKDGTRLAGDDAPKRKDLERWLKEHPGYVE
DSGACIPRMQLHDGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLK
DLCRFLKENPEYGVAPEWGEVVKQSGYLPEGMFDRILTGPVVREEVSRRGRRPKSEIAKA
TAAAAAATAASMSANPLLANGLLPGVDLPSLQALQQNLQSLQSLQVTAGLMGMPAGLAAG
GEAKNVAAMFPMLLSGMAGLPNLLGMGGLLAKSTEPILEEKKGSDSKEADIKKERTEDQN
TDTGGENSVSSSPSTSSAAAAANPLSLNPLLLSNILYPGMLLTPGLNLHIPALSQSNIFD
VQNSESNDTGSAKPTEEKEKNSRVRDQEDKGGTEPSSHNENSTDEGSEKADASSGSDSTS
SSSEDSDSSDED
NT seq
8679 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagtgagacattagaa
ggtttgtcagatgatgcctttgttcaacctggacctgtttcacttgttgatgaattgaat
ttgggtgcagaatttgaacctttgcacatagactcattgaaccatgtgcaagatgctcaa
aatcaacagaagatgagtgagtttgatcagctgagtcagtacgattcactgaaacttcac
tcagtaaatcagtcctttaacagcacggctgacaacgtcttatcaccgcactcccagttc
agttgttcaccaattcatccgcaaaaccagtccaatgggatgtttccagacgtggctgat
gggagccctatgtggggtcatcaaactgccacaaccgtttccaatcaaaatgggtccccc
tttcaccaaggacattctcagtctatgcagcaaaacaaaagctttgtagcacaccatgac
tttgccttatttcaggctaacgaaccgcagcatcagtgtgcctcgctacggccgccgcag
agcaggagtggcgcggcgcaggatgctctgagtcagccaaaagacttcatggaagtgaac
gtgtccacgtctcacagagtcagtgttaaccacccgcctgcggtttctaatccatccact
tcacagcagcctctgtccgttcagcagttttctcaagctgcgagcgcttcgatacatttc
tgtgggaatcaagaaggaaatttcgatggacagtccccaactattactccgtgttctgtc
aataatagccaacaattttcatctccctattcttactctaacaaccacatttctcctacc
agccttcttcagcctacgacagctctttctaccagccagcagacacactcgatctccgac
ttcactggaagcgatgcctttacatctcaaacagggaccaagcaagaaacaacagagcac
atgttgaatcctagtacacctttgaattcaaatagttatcaaatgttgcattctgcgcat
cctcagggcaactttagtagttcaaaactctctcctgtgaatattagtttcccagcttct
gctggttctgcttctcagataagccatttcaccgaccctatagaaagcaacggttttacg
tctttagaggacaacttacttcatcaagtcgagactcacaatgaaccgtttacgggactt
gacccagacgacctcctccaggaagaccttctgccacagtttgacgattccgcgtttgtt
caggatagcacaagccatgttttggagcatgacctagaccaccacatcaccccacagccg
gtaacaccctcgcctgacctcgttcgggcacagcctccaagccagatccatccttggcac
tcttcggtttctcatcagcatccgcaggaccggggtcgtgtcaccttgcagggacagcct
ccttcctccaagaagactgatggttcaggatcatatactaagttgcagaatacccaggtg
agggcaatgtctgaaaagaagcagaagaaaaaagcagatttggaaagtaaacaagagaag
gcaaatcgcataatatctgaagcgattgcaaaagcgaaagagagaggagagagaaacatt
ccacgggtaatgagtcctgaaaacttccccagtgtttcagctgaaggaaaggaggagaag
aaggggagaagagtgaaatccaaaccaaaggacaaggagagcaaaaaaccgaaaactggt
tcttcgtccaaaattaaagagaaaacaaaaattggaaagctaatcatcacactgggtaag
aagcagaaaagaaaaaacgagtcttcggatgaattatctgatgctaagcagactccgcag
cggccattgaaagatgaagactcacagaagagaagatcaaatcgtcaagttaaaaggaaa
aaatacgctgaagaaggagaagggaaacaatcggaagaagaagcaaaagtttctgtgaaa
attaaaaagaattctgcccctctacctgctgagcagcctttacagttatttgtggaaaat
ccaagtgaagaagatgcagcgattgtagacaaaatcttagcctccagggtgacaaagaaa
gaaatatctgctgggatgactgtggaaacagaagagttttttgtgaaatacaagaactac
tcatatctccactgtgagtgggccacagaacaacagcttttaaaggataaaagaatccag
cagaaaataaaacgattcaaactaaggcaagcacaaagagctcacttttttgcagatatg
gaagaagaaccttttaatcctgactatgttgaagtagaccgggtgttagaagtatctctt
tgtgaagacaaggacactggtgagcctgttatttactatttagtaaaatggtgttcgttg
ccatacgaagacagtacgtgggagctgaaagaagacgtagatcaagcaaaaatagaagaa
tttgaacaattgcaagcttccaggcctgactcaaggagattggaccgaccgcctccaaac
gcctggaagaagatagaacaatccagggaatacaaaaacggcaatcagctcagggaatat
caactggaaggacttaactggctcctgttcaactggtacaataggcgaaattgcatttta
gcagatgaaatgggtctcggcaaaaccattcagtcgattacattcctctacgagatcctc
ctggctgggataagggggcctttcctgatcatagctccgctttccactatcgcaaactgg
gaaagagaatttcgcacatggaccgacctaaacgttgtggtgtatcacggcagcatgatc
agcaggcagatgatccagcagtacgagatgtacttcagggactcccagggacgtatcgtt
cgaggtacctacagattccaagccattatcacaacttttgaaatgattcttggtgggtgt
ccagagttaaatgcaattgagtggcggtgtgttattattgatgaagctcacagactgaag
aacaaaaattgcaaactcttggaaggactgaaattaatgaaccttgagcataaagtgctg
ttgacgggtacccccctgcagaacacggtagaagaattattcagcctccttcattttctt
gaacctttgcgttttcctgctgaatctacgttcatgcaagaatttggagaccttaaaaca
gaggaacaggttcagaaactgcaggctatcctgaaacccatgatgctcagacgattgaag
gaagatgtagaaaaaaagctggctccgaaggaggagactataattgaagtagaactaact
aacattcagaagaaatattatcgagcgattttggagaaaaattttgctttcttatccaaa
ggagcagggcaagcaaatgtgcccaacctggttaacactatgatggaactcagaaagtgt
tgcaatcacccttatctcatcaaaggtgctgaagagaaaatccttggagagtttaaagaa
acatacagcccaagtgctcctgacttccatctgcaagcaatgatccagtctgctgggaaa
ttggttcttattgataaacttcttccaaaaatgaaagctggaggccacaaggtccttatc
ttctctcaaatggtgcgctgcctggatattttggaggattaccttatacataaaagatac
ttgtatgaacgaattgatgggcgagtacgagggaacctcagacaagccgccattgaccgg
ttcagcaaaccagattccgatcgctttgttttcctcctctgcaccagggctggtggtctg
ggcattaatttgactgcagcagatacatgtataatttttgattctgactggaatcctcaa
aatgatctgcaggctcaggcccgttgtcaccggatcggtcagaacaaagcagtgaaggtc
tacaggctgataacgcgcaactcctacgagcgagagatgtttgacagagcaagtctgaaa
ctggggctggataaggctgttctacagagtatgagcggaagagaaaacagtgtcggtggt
atccaacaactctccaaaaaagaaatagaagatttgcttcgaagaggtgcctatggtgcc
attatggatgaagaagatgaaggctctaaattctgtgaggaagacattgaccaaattttg
cagcgtcggactaaaactatcacgattgagtcggaaggaaggggctccacatttgccaag
gctagttttgttgcatctggaaacaggactgatatttccctagatgatcccaacttctgg
cagaaatgggccaaaaaagcagaaatagatatagatgctatcagtggtagaaacagcctg
gttattgataccccgagaattaggaagcaaacccggcccttcagtgccacgaaggacgag
ctggcagagttgtctgaagtggagagcgagggtgacgaaaaaccaaaactccgccggcct
tgcgaccgttccaatggctacggaagaacagagtgcttccgggtggaaaaaaacttgctg
gtctatgggtggggccgatggagagagattttgtcccacggtcgcttcaagaggcagctg
aatgaacatgacgtggagataatttgccgagctctgttggcctattgtcttgttcactac
agaggggatgagaaaatcaaaagttttatatgggatctcattaccccgacagaggatggg
caaacacgagagttacagaatcaccttggcttatcagcccctgtgcctagaggaagaaaa
ggaaaaaaagtgaagacccaggctagcactttcgatatacacaaagcagaatggcttcga
aaatacaatccagaacatctgttgcaagacgaaggatacaaaaagcacataaaacaccat
tgcaacaaggttttgcttcgagtaagaatgctgtattacttaaaacaagaagtcattggt
aatgaatgccaaaaggtgtttaatggaattgatgccagtgaaattgatgtttgggtccct
gagccagatcactctgaagttcctgccgagtggtgggatgcagaagcagataaatccctt
ctcattggagtttttaaacatggttatgaaaaatacaacacgatcagggcagacccagcg
ctgtgcttcttggaaagggttggcaagccagatgaaaaagcagttgctgccgaacagaga
gcaaatgattatatggatggggatgtagaagatccagaatataaaccagcaccagcattg
tttaaagatgacatagaggatgatgtttcatccccgggtgatctagtaatagcagatgga
gatggacaaatgatggaaggagacaaaatctattggcccactcagtctgccttaacaaca
cgtcttcgccgcctaataacagcttatcaacgaacaagtaaaaatcggcaggcccagcag
atccagccagcattcccagtacaaaccagtatgatgcagcctccgtatgaggaagctgct
ctgaatccaaagatggctgctaagattgaaagacagcaaagatggacgagaagagaagaa
gctgacttctacagagttgtgtccacatttggcgtggtgtttgatcctgaaaggggacgg
tttgactggaccaaatttcgagcgatggctcggctgcacaagaaaacggacgagagcctg
gagaagtacttgtatgcgtttatgtccatgtgccggagagtctgtcgtctcccctcaaaa
gaagaactcgtagacccaaacatctttatccaaccaattacagaggaacgtgcttctcgg
actttgtatcgcattgagctcctaaggaaggtgcgagaacaggctcttagacacccacag
ttgttcgagcgactaaaactatgccagccaaacccagacttacccgtctggtgggagtgt
gggactcatgacagggatttacttattggagctgctaaacatggagttagcaggacggat
tatcacattcttcgtgaccctgaactctcatttatgtctgcccagaggaactataatcaa
aataaagtggcactctcaaggacttctactccactcttgcatcagtaccagatggcatta
tctgcttctcctctgacacctcaatcaagattgtcagatgctaaagtgaatgcttttgag
gacacaaaagctaaaaatgaaaatctgaaagaggaccttcagtcttctgaagaggaatct
atgtctacagaggagacacagacaataatgaaatctgaacctttgagtccgagaaacggc
gcaccgatacaaaatgccgaccacaaacccagcatgaggacagagacagacaggcgcatg
gtggctgcaaggacagagcctctaactccaaacccagcttccaaaaaacagagggtcagc
aaaagggggtctgactccagctctgactcagactctgactcagatagatcatcctgttct
tccaggtcatcttcttcatcctcttcgtcttcctcatcttgttcccactctcgatcaggc
tctagctcttcatcgtcttcatcttgttcttcagcatcttcatcctcctcgtcgtcatcc
tcctcctcatcatcgtcgtcatcgtcatcatctgaagagagtgatagtgatgaagaggag
acacaaaagcgtgcaggaggaaccccacatataaaagcgtatgatgaagagagtgtggcc
tctctgagtacaacgcaagacgagacgcaggacagtttccagatgaacaacgggacaccg
aattccagttacctcctgcaaggtggatacatgttggctgcatcctactggccaaaggat
cgagttatgattaaccgtcttgacagtatttgtcaaacggtgttgaaaggtaaatggcct
tcagccagacggagctacgacagcaacacggtggcctcgttctacacaaccaaactgctg
gacagccccggggcagccgccgattacagcgagcccagcgcacccacaccccctctcgcg
gggctgaaagaagaatacgatcagtcaccgcagatgtcaaaggtgaagaagcatgtacga
gaaaaggagtttacagtgaaaatcaatgacgaaggtggtttgaaattgacttttcagaag
cagggactgtctcagaaaaggccgtttgaaagcgaggaaggtgcattgggacagcagcaa
tacctggctcggctgcgcgaactccagaacgcttcagaaaccagccttgtcaccttcccc
aaatcacttcctgaatcaggtacttccagtcacttaacagccagtgccaatggagtcgta
gctgacagtcagcctgcagtcaagaagagaagagggagaaggaagaatgtggagggagtt
gatgtcctctttatgaacagaaataaacagcctaatcatgttaatccaggtatcaactca
tgcccagtggctgcaggaatgaacccggtgctcccgtacgcgcagtcccaaggcgtgctg
gatgctgagagcccagtgcccgttattaaccttaaagatggaacgaggcttgcaggtgat
gatgccccaaaaagaaaagatttagaaaggtggcttaaagaacatcctggatatgttgaa
gattcaggagcttgtattcctaggatgcagctgcacgatgggaggcctaaacaaaaaaga
caccgttgtcgaaatcctaataaactggacgttaatagtttgactggtgaagaacgtgtt
cagctcataaataggagaaacgccagaaaggtggggggtgcgtttgctccgcctctgaag
gatttgtgcaggttcttgaaagaaaatccagaatatggagtggctcctgaatggggagaa
gttgtaaaacagtctgggtatctcccggaaggtatgtttgaccgtattctcaccggcccc
gtggtgcgggaagaagtcagccggcggggcaggcgccccaaaagtgagattgccaaggcg
acggcagctgcggcggcggccacggccgccagcatgtcggcgaaccctctgctggccaac
ggcttgctgccgggcgtggatctgcccagcctgcaggccttacagcaaaacctgcagagc
ctgcagtcgctgcaggtgacggcgggattaatgggaatgccggccggcttagcggccgga
ggagaagcgaagaacgtggctgccatgttccccatgctgctgtcagggatggctgggtta
ccaaacctgctgggcatgggaggacttctggccaagtctacagaacctattttggaggaa
aaaaagggaagcgattcaaaggaggcagatataaagaaagaaaggacagaagaccaaaat
acagatactggcggtgaaaactctgtttcaagttctccttcgacatcctctgctgctgcg
gctgccaatcctctctctcttaacccattacttttgtccaacatactttacccagggatg
cttctcactccaggccttaatcttcatatcccagctttgtctcagtctaatatttttgat
gtacagaacagtgaaagcaatgacacaggctcagccaagcccacagaagaaaaggagaaa
aattccagggttagagatcaggaagacaaagggggaacagagccaagctctcacaacgaa
aacagcacagatgagggttcagagaaagcagatgcttcatctggatctgatagtacatcg
tcttcatccgaggattcagattctagcgatgaagactga
DBGET
integrated database retrieval system
