Caloenas nicobarica (Nicobar pigeon): 135992960
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Entry
135992960 CDS
T11056
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cnic04121
]
135992960 (PDZRN3)
Enzymes [BR:
cnic01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135992960 (PDZRN3)
Ubiquitin system [BR:
cnic04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
135992960 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
Sina_ZnF
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-TRAF
Prok-RING_4
zf-rbx1
PDZ_Tricorn
U-box
TRAF3_RING
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
135992960
NCBI-ProteinID:
XP_065498549
LinkDB
All DBs
Position
11:12039609..12182184
Genome browser
AA seq
1061 aa
AA seq
DB search
MGFELDRFSGEVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVNCQRIS
TKELNHVLPLKSLILKLDIKCDNHARGCEAVVPLQHLGEHTETCDFSPAKCRNRGCRQVL
NLRDVESHMRERCEARPAGLCEQGCGLMLTHGERRAGGHGCLRALRAHGAALQARAAALE
KALKKEALRAGKREQSLLSRLAAAQLELQVTALRYQKRFTQYSARLDALARARAASPGKG
EETKALTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDTGPAAKEGGLQIHD
RIIEVNGKDLSKATHEQAVEAFKTAKEPIVVQVLRRTPRTKGFTPPHESQLVDVGTQTDI
TFEHIMALSKMGSPTPSASVLDPYLLPEDHPSVHEYYDPNDYMGGIHQEMDRDELELEEV
DLHRVNSQDKLGLTVCYRTDDEDDMGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQN
REEAVALLTSEESKNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SMLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDDSTRNDESSEQENNADDHTTSSNTL
GSEKKLTYSHDTLGSGDMQFSNESFISADCTDVDFLGIPVDECERFRELLELKCQVKSAN
PYSLYYHNSTLDMSKSDQESVDRELEMLNEELRHIELECLNIVRAHKMQQLKDQYREPWM
LHNSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEMSPDNSLR
RTAEGINCQDNEGAAAYNISQNNLFASSESHESSTSKSHVSAKDPDLGKQLESKERKASD
GSKSPTHGQKPSGSYVSPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVS
MCKDFNSSQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAIS
EMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQGAEEKKEMNIIELSHKKM
MKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgagctggatcgcttcagcggggaggtcgatcccgacttcaaatgcaatctg
tgcaacaaagttttggaggacccgctgaccaccccctgcggccacgtcttctgcgccggc
tgcgtgctgccctgggtggtgcagcagggcagctgccccgtcaactgccagcgcatctcc
accaaggagctcaaccacgtcctgcccctcaagagcctcattctcaagctggacatcaaa
tgcgacaaccacgcgcggggctgcgaggcggtggtgccgctgcaacacctgggcgaacac
accgagacctgcgacttctccccggccaagtgccgcaaccggggctgccgccaagtgctc
aacctccgcgacgtggagtcgcacatgcgggagcgctgcgaggcgcggcccgccggcctg
tgcgagcagggctgcggcttgatgctcacccacggcgagcggcgggccggcgggcacggc
tgcctgcgcgccctgcgcgcccacggagccgcgctgcaggcgcgggcggcggcgctggag
aaggcgctgaagaaggaggcgctgcgagccggcaagcgggagcagtcgctgctgtcgcga
ctggcggcggcgcagctggagctgcaggtgacggcgctgcgctaccagaagcgcttcacg
cagtacagcgcccgcctcgacgccctggcccgcgcccgcgcagcctcccccggcaagggt
gaagaaactaaagcactgactcttgtccttcatcgtgactctggctctcttggatttaat
attattggtggccgaccatgcgtggacaatcaagatggctcatctagtgaaggaattttt
gtatcgaaaatagtagacacggggcctgctgctaaggaaggagggctacaaattcatgac
aggattattgaggtcaatgggaaggatttatctaaagcaacccacgagcaggcagtggaa
gcgttcaaaacagccaaggagcccattgtggtgcaggtcctgaggagaaccccacgcacc
aagggcttcactcctcctcacgagtctcagctggtcgatgtgggcacacagacagatatc
actttcgaacacatcatggctctgagcaagatgggctcccctactccctccgcctccgtg
ctagacccgtacctcctgcctgaagaccatccatcagtgcatgaatactatgacccaaat
gactacatgggaggaattcatcaagaaatggaccgagatgagttggaattagaggaagta
gacttacatagagtgaacagccaggacaagcttggccttactgtatgttacagaacggat
gatgaagatgacatgggtatttatgtgagtgagattgatcccaacagtattgctgcaaaa
gacggccgactccgagaaggggatcgcattattcagatcaatggcatagaggtacagaac
cgagaagaagctgtggcacttctcaccagtgaagagagcaagaatatctccctacttgtt
gcaagaccagaaattcagctggatgaaggatggatggatgatgacagaaatgattttctg
gatgacttgcacatggacatgttagaggaacagcaccaccaggcaatgcaatttactgcc
agcatgcttcagcagaagaagcatgaggaggatggaggtaccacagatacagccactatt
ttatctaaccagcacgagaaggacagtggcgtggggcgcacagacgacagcacccggaac
gatgagagctctgagcaggaaaacaacgcggatgatcacaccacctcctccaacacttta
gggagtgagaagaagctgacgtacagtcatgacaccctgggaagtggcgatatgcagttc
agcaatgaatcatttatctcggccgactgcacagatgtcgacttccttggcatccccgta
gacgaatgtgagcgattccgggaactgctggaactgaagtgccaggtgaaatctgccaac
ccttacagtctgtattatcataacagcactctggatatgagcaaaagcgaccaagaaagt
gttgacagagagctggagatgctgaatgaggagctgcgccatatcgagctagaatgcctg
aatattgtgagagctcataaaatgcagcagctgaaagatcagtaccgggagccttggatg
ctgcataacagcgggttccgcaactataacacaagcatcgatgttcgcaggcacgagctc
tcagacattacggagctccccgagaagtctgacaaggacagctcgagcgcatacaacaca
ggcgagagctgccgcagcacgccgctcacgctggagatgtcccctgacaattcgctgcgc
agaactgcagaaggcattaactgtcaggataacgagggggcagcagcatataacatctcc
caaaataatttatttgctagctcagaaagtcatgaatccagcactagtaaatcccatgtc
tctgctaaagatcccgaccttggcaagcagctggaaagcaaggagagaaaagccagtgat
gggagcaaaagccctactcatggtcaaaaaccttctggctcttacgtctccccataccat
cactctccatataaacatgctcatattcctgcccacgcacagcactatcagagctacatg
cagctgatccaacagaaatcagcagtggaatacgcacagagccagatgagtctggtgagt
atgtgcaaagactttaattcaagccagagcgaaccaaggatggagtggaaagtcaaggtc
agaagcgacgggacccgctacatcacaaagaggccagtcagggacaggctgctgagagaa
cgtgccataaagattaaggaggagcgcagtggtatgacgacagatgatgatgccataagt
gaaatgaagatgggccgttactggagcaaggaagagcggaagcagcatttggtgaaagcg
aaggagcagaggcggaggcgcgagtttatgatgcagagcaggttggattgcttaaaggaa
cagcaaggtgcagaagaaaagaaagagatgaatatcattgaactgagccacaaaaaaatg
atgaagaagagaaataaaaaaatatttgacaattggatgacaatccaagaactgctaacc
catggaacaaagtcaccagatggcacacgggtgtacaattcctttctgtcagtgactact
gtataa
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integrated database retrieval system
