Caloenas nicobarica (Nicobar pigeon): 135993013
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Entry
135993013 CDS
T11056
Symbol
TMF1
Name
(RefSeq) TATA element modulatory factor isoform X1
KO
K20286
TATA element modulatory factor
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cnic04131
]
135993013 (TMF1)
Membrane trafficking [BR:
cnic04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
135993013 (TMF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
SlyX
ATG16
Motif
Other DBs
NCBI-GeneID:
135993013
NCBI-ProteinID:
XP_065498640
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Position
11:13790820..13807775
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AA seq
1106 aa
AA seq
DB search
MSWFNASQLSSFAKQALSQAQKSIDRVLDIQAEEGPWADAVIPDYGDGTNSLISGGWDTS
SWGLSSNTEPQNQSISPTAITKPVRRTVVDESENFFSAFLSPTDVQSIQKNPVVSKPPAK
SQRPKEEVKNTLKESQHPSQLEVPVTTEAEGKDSSVAGLVDLKNLDIPNEKLEENSVLKS
NAKPEESANEVTDKKVSTLNLEVTEDALNEKSSVGGDGTGGAPGSTSQPLNAGTKDMGLE
TKERKTEDRQSNTPSPPISTFSSGTSTTSDIEVLDHESVISESSVSSRQEAADSKSSLHL
MQTSFQLLSTSACADYNRLDDFQKMTESCCSSDAFERIDSFSVQSLDSRSVSEINSDDEL
SGRASASASVAVSPSAPKTETVDALKSKSENLTDTSVLHAEEAEMEESGRSATPVNSEQP
DVLVATVQTLEEQIVKEESEPQQDAVENLLEEDTEKQELKKMIESLTEKLEKREIQLLST
SKEKARLEEAYDNLKDEMFRMKEESSSLSSLKEEFAQRIADAEKKLQLACKERDAAKKEV
KTVKEELATRLNTNETAELLKEKEEQIKGLMEEGEKLSKQQLHNSNIIKKLRAKEKEREN
INTKQNKKIKELEEELQHLKQVLDGKEDLEKQHRDSIKQLNSVVERQEKDLAKLQAEVED
LEERNRSVQAALDSAYKELADLHKANATKDSEAQEAALSREMKAKEELGLALEKAQDEAR
QQQEALAIQVADLRLALQRSEQQAARKEDYLRQEIGELQERLQEAESRNQELSQSVTSAT
RPLLRQIENLQATLGAQTSAWEKLEKNLSDRLGESQTLLAAAAERERAATEELLSNKIQM
SSTESQNSLLRQENTRLQAQLEVERNRLKKMENENSRYEVELEGLKDEYAKTLEDAKKEK
TLLATQLEMEKMKVEQERKKAIFVQEAAKEKDRKSFTVETVSSTPTMSRSSSISGVDMAG
LQTSFLSQDDPHDHSFGPIATSGSNLYDAIRMGAGSSIIENLQSQLKLREGEISHLQLEI
GNLEKTRSIMAEELVKLTNQNDELEEKVKEIPKLRTQLKDLDQRYNTILQMYGEKAEEAE
ELRLDLEDVKNMYKTQIDELLKQRQN
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgagctggttcaacgcctcgcagctgtccagcttcgccaagcaggcgctgtcgcaggcc
cagaagtctatcgaccgtgtgctggacatccaggccgaggagggcccctgggccgacgcc
gtcatccccgactacggcgacggaacaaattctctcataagtggaggatgggatacatct
tcctggggtttaagttcaaatacagaaccacagaatcagtcaatatcaccaacagcaatc
actaaaccagtgaggaggacggtagtagatgaatccgaaaacttcttcagtgcctttctc
tctccgacagatgttcagagtatacaaaaaaatccagtggtatccaaacctccagccaaa
tcacagcgacccaaagaggaggtgaaaaacactttaaaggagtctcagcaccccagtcag
ctggaagtaccagtgacaacagaggcagaagggaaggattcctctgtagctggcctagtg
gacttgaaaaacctcgatattcccaatgagaaattagaagagaattctgtgcttaaatct
aatgccaagcccgaagaaagtgcaaatgaagttactgacaaaaaggtgtccactctaaat
ttggaagtaactgaagatgctcttaatgaaaaatccagtgttggaggggatggaacagga
ggtgcaccaggtagcacttcgcagcctcttaatgcaggtacaaaagacatgggtttggaa
acaaaggagcgaaagactgaggacaggcaaagcaatacaccgtcacctccaattagcact
ttctcctcagggacatccacaactagtgatattgaagttttggaccatgaaagtgtaata
agtgagagctcagtaagttcaagacaagaagctgcagattcaaaatccagtcttcaccta
atgcaaacatcattccagcttttatctacatctgcgtgtgcagattacaatcgtttggat
gactttcaaaaaatgaccgagagctgctgctcttctgatgcttttgaaagaattgattca
ttcagtgtacagtctttagacagtagaagtgtaagcgaaataaattcagatgatgaatta
tcgggcagggcttctgcttcagcatctgttgctgtcagtccttctgcaccaaagacggaa
acggttgatgccctgaaaagtaaatccgaaaacttgactgacacttctgttttacatgct
gaggaagctgagatggaagagagtgggagaagcgcgacccctgttaattctgagcagcca
gatgttttggttgctactgtgcaaactcttgaagaacagattgtgaaagaggagagtgag
ccgcagcaggatgctgttgaaaatttgttagaagaggacactgaaaagcaagagcttaaa
aagatgattgagtcattaactgagaaactggagaagagggaaatacagttattaagtact
agtaaagaaaaggcgcgtctggaagaagcatatgataacctaaaagatgaaatgttcaga
atgaaagaagagagcagtagcctttcatctcttaaagaggagtttgctcagcggattgca
gatgctgaaaagaagctccagctagcctgcaaagaaagagatgcagcaaaaaaggaagta
aagactgttaaagaagaactggctactagacttaatacaaatgaaactgctgaattactg
aaagaaaaagaagagcaaatcaaaggattaatggaggaaggagaaaagctttccaaacag
cagctgcacaattccaacattattaagaaattaagagccaaagagaaagagagggaaaat
attaacacgaaacagaacaaaaagattaaggaattggaagaggagttgcagcatttaaaa
caggtgcttgatggcaaggaagaccttgagaagcaacatcgagacagcattaaacaactg
aacagtgttgtagagcgacaagaaaaggatcttgctaaacttcaagctgaagtggaagac
cttgaagaacggaacagaagtgtccaggcggcgcttgacagtgcatacaaggaacttgca
gatcttcataaagctaatgctacaaaggacagtgaggcacaagaagcagccctgagtcgg
gaaatgaaggcaaaggaagagcttgggttagctctggagaaggcccaggatgaggcacga
cagcaacaagaagctttggcaattcaggtggcagacctgagactagcactgcaacgatca
gaacagcaggcagcaagaaaagaagactatttacgccaggaaattggtgaactacaagag
aggctccaagaagcagagagccggaaccaagaactaagtcaaagtgttacatctgctaca
cgaccacttctccggcagatagaaaatctgcaagccacactgggagcacaaacctctgcg
tgggaaaaattggaaaagaatctttccgacaggcttggtgagtctcaaactcttctagca
gcagctgctgagagagaacgggctgccacagaagaacttctttctaataaaattcagatg
tcttctactgaatctcagaatagtcttttaaggcaagaaaatacacgccttcaggctcag
ctagaagtggagagaaacaggttgaagaaaatggaaaatgaaaacagtagatatgaggtt
gaactagaagggctcaaagatgagtatgcaaaaaccttggaagatgcaaagaaagaaaag
acgctgcttgctactcagttagaaatggagaagatgaaagttgaacaggaaagaaagaag
gcaatttttgtgcaagaagcagcaaaggagaaggatcggaagtcatttacagttgaaact
gtttcaagtactccaactatgtcacgctctagttccataagtggagttgacatggcaggt
cttcagacatctttcctctcacaggatgatcctcatgatcactcatttgggccaatagct
actagtgggagcaatctttatgacgctataaggatgggagcaggttcaagtataattgaa
aaccttcaatcacagctaaaactgagagaaggagagatttcacatctgcagctagaaatt
gggaaccttgagaaaactcgatcaataatggcagaagaactggttaaattaacaaatcaa
aatgatgagcttgaagaaaaagtgaaagaaataccaaaattacgcacgcagttaaaggac
ttggatcaaagatacaatacaattcttcagatgtatggagagaaagcagaggaagctgaa
gaactgcgactggatctcgaagatgtgaaaaacatgtacaagactcagatagatgaactt
ttaaaacaaagacaaaattaa
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