Caloenas nicobarica (Nicobar pigeon): 135993353
Help
Entry
135993353 CDS
T11056
Symbol
PCDH11X
Name
(RefSeq) protocadherin-11 X-linked
KO
K16498
protocadherin delta 1
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
135993353 (PCDH11X)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cnic01009
]
135993353 (PCDH11X)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cnic04515
]
135993353 (PCDH11X)
Protein phosphatases and associated proteins [BR:
cnic01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
135993353 (PCDH11X)
Cell adhesion molecules [BR:
cnic04515
]
Cadherins
Protocadherins
135993353 (PCDH11X)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
K319L-like_PKD
Cadherin_4
Fibulin_C
TMEM154
Motif
Other DBs
NCBI-GeneID:
135993353
NCBI-ProteinID:
XP_065499228
LinkDB
All DBs
Position
12:complement(9400628..9873859)
Genome browser
AA seq
1231 aa
AA seq
DB search
MDLLSGTYLLAVLLACIVFQSGAQEKNYTVREELPENVLIGNLLKDLNLTLDPDVPLSSP
LQFKLVYKTGDVPLVRVEENTGEIFTTANRIDREKLCAGIFSENRCFYEVEVAVLPDEVF
RLVKIRFLIEDINDNAPLFPSTVINISIPENTAINSRYSVPSAIDPDIGVNGIQHYELLK
GQNVFGLDIIETPEGDKWPQLIVQQILDREQKDTYVMKIKVEDGGSPPRSSTAILQVTVT
DVNDNRPVFKENDIEVSVPENAPVGTSVSQLHATDADLGSNAQIHFYFSNQISSLAKRLF
AIDNTTGLITIREPLDREESPVHKLTVLASDGSSTPSRATVTVNVTDINDNVPSIDTRYI
INPVNGTVLLSEKAPLNTKIALITVMDKDADLNGKVTCFTDHDVPFRLKPVFDNQFLLET
ATFLDYEATREYAIKIVASDSGKPPLNQSAMLLIKIKDENDNAPVFTQPIIGLSIPENNA
PGTQLTKISATDADSGRNAEISYILGSDAPPIFNLDRRTGILTAVRKLDREKQDRYSFTV
LAKDNGMPPLQTNATVTVSVLDQNDNSPAFTHNEYNFYVPENLPMYGTVGLITVTDADSG
ENAAVTLSILNGRDNFIIDPLTGVIRPNITFDREHQGSYTFQVKAVDGGRLQRSSTAKVT
INVVDVNDNRPVFVIPSSNYSYELVPTSASPGSVVTKVFAVDNDTGMNAELRYSIIGGNS
RGLFTIDQLTGNITLKEKVITSDHGLHRLVIKVNDLGQPESLYTIALVHLFVNDTVTNSS
YVQELVRRNMETPVGQNIGDGEITPQTNDYVKIIIAIIAGTMTVILVIFVTALVRCRQTP
RHKVVQKNKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVTIEESKPDDPGHEHING
TLDIPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPVPPKKHHV
IQELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGGFKTPGPIHTRQHTKEVGRPQTP
LKETTLEPWTQPQPQPQRRVTFHLPDGSQESCSDSGLGDHEPASGASTSHPLPLGFPRDE
YYEQASPNSRTEGDGNSDPESTIEINLQKALAEASETCTQECLILGHSDNCWMPPSLTQY
QQSNTPLPSFGFQQGWGRGARPEGRHTLGRPLPKDDTEKGQSGPRPQFYNTCERHCASED
PVKVIPLANFATARQAPVSGSSATFVHEHQL
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atggacttgctgtctggaacctacctcttggcagtcttattagcctgtattgtatttcaa
tctggcgcacaggagaagaattataccgtgcgggaagaactgcctgaaaatgtcctcatt
ggcaatttgctcaaggatcttaacctaacgctggacccagatgtgcccctttcctcaccg
ctacagttcaagcttgtgtataagactggggatgtaccgttagtacgggtggaggagaac
actggtgagatattcacaactgcaaaccgcatagaccgagagaagctgtgcgctggcatc
tttagtgaaaaccgctgcttttatgaggtggaggttgctgttttacctgatgaagttttc
agactggtcaagatcagattcctaatagaggatataaatgacaatgcccccctcttcccc
tcgacagttattaacatctctatccctgaaaacacagcaattaattctcgttattctgtt
ccatctgccatcgatccggacattggtgtgaatggcattcaacattatgaactccttaag
ggtcaaaatgtatttggtcttgatataattgagacgcctgagggagataagtggcctcaa
ctgattgtccagcagatcctggacagggagcagaaggatacttatgtgatgaaaattaaa
gtcgaagatggtggaagccctccaagatctagcactgccatcctacaggtcacagtgact
gatgtgaatgataatcgcccagtcttcaaagagaatgacatcgaagttagtgttccagaa
aatgctccagtgggcacctctgtttctcagctccatgccactgatgcagacctgggctca
aatgcacaaatccacttctatttcagcaatcagatctccagtttggccaaaaggctgttt
gccattgataacaccactggcctcatcactataagagaaccactagacagggaggaatcc
cctgtgcacaaattaactgttttggcaagtgatggcagttcaactccatcaagagcaaca
gtgactgttaatgtcacggatattaatgacaatgtcccatcaatagacacaagatacatt
atcaatccagtgaatgggacagtgcttttgtctgagaaggctccccttaatacaaaaatt
gcattgataacagtaatggacaaggatgctgatctgaatggaaaagttacttgttttaca
gatcatgatgtcccttttaggctaaagccagtgtttgataatcagtttctcctggagaca
gccacatttctagattatgaagccacgcgggaatatgccattaaaatagtggcttcagat
tcagggaaacctcccttaaaccagtctgcgatgctcctgatcaaaattaaagatgaaaat
gacaatgccccagtttttacacagcctatcataggtctttccatccctgaaaacaatgct
cctggtactcaactaaccaagataagtgctacggatgctgacagtgggcgcaatgctgag
attagctatatcttgggttctgatgcaccccctattttcaaccttgaccgccgcacaggc
attctgacggcagtgagaaagctggacagagaaaagcaagacaggtactccttcactgtg
ttggctaaggataatgggatgccacctttgcagaccaatgctactgtgacagtgtctgtc
ctggaccagaatgataacagccctgctttcacacataatgaatataatttctatgtgcca
gaaaatttacccatgtatggcacagtggggctcatcacagttacagatgctgactctgga
gagaatgctgcggtcactctctcgatattaaatggtagagataatttcattatagatcca
cttactggtgtgataagacctaatattacctttgatagggaacaccaggggtcatatact
ttccaggtgaaagctgtggatggaggaagactgcagcgttcctcaacggccaaggtgacc
atcaatgttgttgatgtaaatgacaacaggcctgtttttgttattccttcatctaattat
tcgtatgagttggttccaacatctgccagtccagggtctgtagttactaaagtctttgca
gttgataatgacacaggaatgaatgcagagctccgctatagcatcataggtgggaactca
aggggcttatttacaattgaccaattaacaggaaatattactttgaaagagaaggtaatt
acatcagatcatggcttgcacagactggtgataaaagtcaatgacctaggacagccggag
tctctttatactatagctcttgtgcatttgtttgtgaatgacacagtcaccaatagttcc
tacgtacaagagctggtgcggaggaatatggaaactccagttggccagaatattggggat
ggtgagataactccacaaaccaatgattatgtcaagatcatcattgccattattgcaggc
actatgaccgttattctggtaatttttgttactgctttagtacggtgccgtcagacacct
aggcacaaggttgtccaaaaaaacaagcagagtggtgaatgggtttccccaaaccaagag
aatagacagatcaagaaaaagaagaagaagaagaagcgctccccaaaaagcctcctcctc
aactttgtgactattgaagaatcgaagcctgatgatcctggccatgagcacataaatggc
actttagacattcctgtagagctagaagaacagactatgggaaaatataactgggccacc
acaccaaccacatttaagcctgatagcccagatttagcaaagcactacaagtctgcttct
ccacagcctacctttcaaattaaacctgagacccctgtaccccccaagaagcaccacgtc
attcaggaactgcctctagataacacctttgtggtgggttgtgactccctctccaagtgc
tcatccagcagctcggacccttacagtgtttctgaatgcagctgtcaaggaggcttcaag
acgccgggccccatacacaccagacagcacacaaaagaagtgggaaggccacaaactcct
ttgaaagagacaaccttggagccttggactcagccacagccgcagcctcagcgccgcgtc
acgtttcacctaccagatggctctcaggaaagctgcagtgacagtgggcttggggaccac
gaacccgccagtggtgccagcacatcgcaccccctgcccctcggcttcccccgggatgag
tactatgagcaggcgtcacccaacagccggacagaaggagacggcaactcagaccccgag
tccactatcgaaataaatctccagaaagccctggctgaagcctctgaaacctgcacacag
gagtgtctcatcctgggccattccgacaactgctggatgccaccgtctttgacacagtac
cagcagtccaacacccctttgccatcatttggcttccagcaaggctggggccgaggagcc
aggcctgagggacgacacactcttgggaggccccttccaaaggacgacactgagaaaggc
cagagtgggcccaggccccagttctacaacacctgcgaaagacattgcgccagcgaagac
cctgtcaaagtcattcctctggcaaacttcgccacggcccgccaggcaccggtgtctggg
agcagcgctacgtttgtacatgagcaccagctataa
DBGET
integrated database retrieval system
