Caloenas nicobarica (Nicobar pigeon): 135993424
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Entry
135993424 CDS
T11056
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135993424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135993424
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
135993424
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
135993424
NCBI-ProteinID:
XP_065499365
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Position
12:3412125..3439653
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AA seq
562 aa
AA seq
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MATELEPPAAGAVPGAAALEAEEDEEHWLYGDDTTGKQEDGPISGHAEPSHSLQDTPQES
RPVSSEDREMSQHALPSGEDDEDDSDSDSDDDDVKVTIGNIKTGAPSYMGTPMNLNLKTG
RGYGASASAKLQPKGIDLDAAGNINGLPVIEVDLDSFEDKPWRKPGADLSDYFNYGFNEE
TWKAYCEKQRRLQLGLDPAPPISTENKITVQQGRTGNAEKEVENNIIKTEFKTDFLALVG
GRMKAGPPPNRKLGGTIDVIGGQAGTIRRVEGRRRDKHASEENPIQVLGDHGSKPQPPQQ
PQQPSQPQQPPQQQPFAPPAGPPPPPLAGPPPPHFLHPPPPVTSVPPPLHPPGLPPPGPI
PGLFPPPLAPPPALLIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSHTPWVTTV
DKGTSSSSSSHWEYSGSRRERERERERERERERDRDRTPTTSEYNNDDERYRYYSRERSY
DFERDYRRSRDRSREREDRHRERRHRDKEESSKHKSSRRKQHESEEGESHRRHKHKKNKR
SKEEKEASEDGAQEGEEQDAKE
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgagctggagccgccggcggctggcgctgtgccgggcgcggcggcgctggag
gcggaggaggacgaggagcactggctctacggggatgacaccactggtaagcaagaagat
ggaccaatttctggacatgcagaaccctctcattctttgcaagacactcctcaggagagc
cgacccgtcagcagtgaagaccgagagatgtcacaacatgcccttccaagcggtgaagat
gatgaagatgacagcgatagcgacagtgatgatgatgatgtgaaagttactattggcaac
attaaaacaggagcaccatcgtacatgggaactcctatgaatctaaacttaaaaacgggt
agaggctatggagcatctgcttcagccaagttgcagcccaaaggtattgacttagatgcc
gcagggaatataaatggattgcctgttatagaagtggatttagattcatttgaagacaaa
ccatggaggaaaccaggtgctgatctttctgattattttaactatggattcaatgaagaa
acatggaaagcttattgtgaaaagcagcgacggcttcagcttggactggatcctgctcct
cccatcagcaccgaaaataaaatcacggttcagcagggaagaacaggaaatgctgaaaaa
gaagtggaaaacaacatcatcaaaacagaattcaagacagacttcctggctctggtggga
ggacgcatgaaggctgggcctcctcctaacaggaagctgggtgggacaattgatgtgatc
ggtggccaggcaggcacaattaggagagtagaaggaagacgtcgtgataagcacgcctct
gaggaaaaccccattcaggtccttggagaccacggcagtaaaccacaacctccccagcag
ccccagcagccgtcacagccccaacagccacctcagcagcagccgttcgctccaccagca
ggcccaccgcctcctccgctcgccgggccacctccaccgcacttcctccaccctcctccg
cccgttacttctgtgccacctcccctgcatccaccaggtctgccaccgcccggtcctatt
ccagggttgttcccgcctccgctggcaccaccaccagctctcctcattccaaccctggat
ggccagccagccagctacaacaacaggcagcctcctccatttggctacaactctgcagat
tcaggtttcatcagctacccacccatctccacgtcccacacgccctgggtgaccacggtg
gacaaaggcacaagcagttccagcagcagccattgggagtactcgggctccaggcgcgag
agggagcgggagcgtgagcgggaacgggaacgggagagagaccgagaccgcactccgacc
accagtgaatacaacaacgatgatgaacgataccgctactacagccgagagcgcagctac
gactttgagcgtgactaccgccggagtcgagatcgcagcagggagcgagaggatcgtcac
cgagagcgcaggcacagagacaaagaggagagcagcaaacataagtcttcgagacgcaag
cagcacgagagcgaggagggcgagagtcatcggcgtcacaagcacaaaaagaacaagcgt
agcaaagaggagaaagaggccagcgaagacggcgcccaggagggagaggagcaggatgcc
aaggagtaa
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